Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03534 ATGGCTACCCATCAGCCACTTCTTCTTCTTCAACCTCCCAAAACTTCCCGCTCCAAAACCATTCCCACACTCCTCTGCTTTGCTGCGGTTTTGTGCTCAGCCATTTTCATTACTAACAAGTTCATCAAACCAAACCCATCTGAAAATGATCTTCCCTTCCTTCAAAACATATGCCACAAGGCTTATGACCCATCATCTTGCATTGAAATGGCCGCCTCAGAATTTCCCTTGAGCATAATCAAAACCACAAACGAGGTTGATTTCTTACAGTCTTTCCTGAGGAAATCCATGCCTAAAGTAATTAGCACAATTGAGAGAGCCAAAGATATCCGCCAAAGAATCAACAGCCCTCGCGGTGAAGCAGCTTTGGCCGATTGTATCGAGCTTATGGAGATTTCAAACGGCCGAATCATGGACTCTGTTTTGGCTCTGAAGAACAGAACGAGCGGCTCCATCGAAAATTCCCACACATGGCTGAGTAGCGTGCTGACAAACCACGTCACGTGCTGGGATGAGGTGGAGAGTTCATTATCCAGAGCGGCGCCAATGGATTTAGGGCTCGAAGAGTTGATTATGAGAGGGAGAAACTCGTTGGGGATGTTGGTTTCGATTTGGGGATTGGACATTAAAAATCTGGGAGAGTTGGAGAAAAAGGGAAATGGGTATCCGAGTTGGTTGAAGAAAGGAGATCGGAGATTATTGGGAGTTTTGGGGAGAGAAATGGAACCGAATATCGTGGTGGCGAAGGATGGGAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGAATCAGTTCCAGATAAGAGCAAGAACAGAATTGTTATATACGTGAAAAGGGGGACTTATGAGGAAAATGTGGAAGTGGGAAAGAAGAAAAAGAATGTAATGATCGTTGGAGATGGAATGGATTCCACCATTATCACCGGTAGCCTTAACGTCGTTGATGGATCAACAACTTTCAAATCTGCAACTGTAGCTGCGGTGGGAGATGGGTTTATAGCCCAAGACATTTGGTTCCAAAACACCGCCGGGCCGGAAAAGCACCAAGCCGTGGCGCTTCGGGTCGGAGCAGATCAATCGGTCATAAACCGGTGTCGTATAGACGCTTATCAGGACACACTCTACACACATTCCAACCGCCAATTCTACCGAGATTCCACCATCACTGGCACCGTCGACTTCATATTCGGTAACGCTGCCGTCGTTTTACAGAACTGTAAAATAGAGCCAAGACGACCGATGAACAACCAAGCCAACATGGTGACGGCGCAAGGCCGAATCGACCCAAATCAGAACACTGGAACTTCGATCCAGCAATGCGACATCGTGGCAAGCTCCGACTTGGAGCCGGTTAAGAAGTCGATTAAGACATATCTGGGGCGACCATGGAAGGAGTATTCGAGGACCGTCATCATGCAGTCGAGAATTGGCGATCTTATTCAACCAGCGGGCTGGGCCGAATGGAATGGGGACTTTGCACTGAAAACGCTGTATTACGGGGAGTATTCAAATACTGGGCCGGGCTCTGATGTTAGCAAGCGAGTGAAGTGGGACGGTTATCATATCATTACGAGCCCATCTGAGGCCCAAAAGTTTACGGTCGATTCACTTATACAAGGAGGTGAATGGCTGGGCCCATCGGGCGCGACTTTTATCCCAGGGCTGTGA 1668 48.02 MATHQPLLLLQPPKTSRSKTIPTLLCFAAVLCSAIFITNKFIKPNPSENDLPFLQNICHKAYDPSSCIEMAASEFPLSIIKTTNEVDFLQSFLRKSMPKVISTIERAKDIRQRINSPRGEAALADCIELMEISNGRIMDSVLALKNRTSGSIENSHTWLSSVLTNHVTCWDEVESSLSRAAPMDLGLEELIMRGRNSLGMLVSIWGLDIKNLGELEKKGNGYPSWLKKGDRRLLGVLGREMEPNIVVAKDGSGNFKTVKEAVESVPDKSKNRIVIYVKRGTYEENVEVGKKKKNVMIVGDGMDSTIITGSLNVVDGSTTFKSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYTHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMNNQANMVTAQGRIDPNQNTGTSIQQCDIVASSDLEPVKKSIKTYLGRPWKEYSRTVIMQSRIGDLIQPAGWAEWNGDFALKTLYYGEYSNTGPGSDVSKRVKWDGYHIITSPSEAQKFTVDSLIQGGEWLGPSGATFIPGL* 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28782584 28784926 - CsaV3_6G049200.1 Csa06g03534 535161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03534 555 Pfam Plant invertase/pectin methylesterase inhibitor 53 179 IPR006501 GO:0004857
Csa06g03534 555 PANTHER PECTINESTERASE 14 554 - -
Csa06g03534 555 CDD PMEI-like_4 51 204 - -
Csa06g03534 555 PANTHER PECTINESTERASE 14 554 - -
Csa06g03534 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 176 IPR035513 -
Csa06g03534 555 SMART PMEI_2 49 200 IPR006501 GO:0004857
Csa06g03534 555 SUPERFAMILY Pectin lyase-like 242 554 IPR011050 -
Csa06g03534 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 204 IPR035513 -
Csa06g03534 555 Gene3D - 238 555 IPR012334 -
Csa06g03534 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Csa06g03534 555 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 176 IPR006501 GO:0004857
Csa06g03534 555 Pfam Pectinesterase 244 540 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03534 Csa-Chr6:28782584 Csa07g01869 Csa-Chr7:18705097 9.94E-153 dispersed
Csa06g03534 Csa-Chr6:28782584 Csa07g02304 Csa-Chr7:21412382 1.01E-151 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03534 K01051 - csv:101216377 1110.9