Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03545 ATGGGAACTTCAAAATACCTTCTCTTCCTTTGCCTCATTCTCATATTCATGGTTTCAACCACCGTTTCTCAAACAGACATCATAACCCATTCATGTTCAAACACCGGCAACTACACCACCAACAGCGTTTACAAGCAAAATCTCGACAACCTCCTTTCCTCCATCGCCTCCAACACCGAAATTGATTACGGCTTTTACAATTTCTCAGCCGGACAGGACCCCGACAGAGTTAACGCCATCGCCCTTTGCCTGGCCGATCTAACGGTGGACGAATGCCGGAGATGTATCCAAAATTCAACTCGAAGAATTCTAGAGGATTGCCCCAACCAGAAAGAAGCTATCGGATGGTACACCGTTTGCATGGTTCGTTACTCAAACAGATCAATATTTCGCGTTGGGAACGACCGAGTTCTTGGCCCAGTTTTTGTTTCCGGTCAGACTGCGTCAGATATAGATGGTTACACTCGATCACTCAGAACTTTGTTGCAAAGACTGAGAAATGAAGCTTCGTCTGGGGATTCTAGACACAAATATGCAGTGGGTGAAGTTGAAGCTACCAATTTGGATAACATATTTGGGTTTGTTCAATGTACTCCCGATTTGTCCTCTGTGGATTGCAATAATTGTCTAATGAAGGCTGCTGAAAATGTTCGGAATGGAAGTATGGGAACTAGGATATTTTCGACCAGCTGTTTTTTGAGATATGAGACTAATGATATTTTCTACAACACTGAGTCGCTGCCTCCCACTGCTGGTGGCGGCGGCGCTACTCCCCCACCTATGTCGTCGCCGCCTCTGCCTCCAACGCCAGGAAATAAGACTAGAACTGTTATTATCGTTGTTGTGTCCATTGTTTCTGTCATCATTCTCGTTGTTGCCATTTTCATCATTTTGAGGTTGAGGAAACGAAAGAACAGAAAATCAACAGATAAATTCGAAGGTGTTGTTATTGGGGACGCCACCGACGAAATTAGCAGTGTGGAGACGATTCAATTTGATTTTGAAACCATTAAAATTGCAACAAATGATTTCTCAAGTGAAAACAAACTTGGACAGGGTGGATTTGGAGCTGTTTATAAGGGTAAGCTGCCTAATGGACAACGTATTGCAGTGAAGAGGCTTGCTAATAATTCACAACAAGGAGATGTTGAATTCAAAAATGAAGTTCTTTTGGTGGTCAAGCTTCAACATCGAAACTTGGTTAGGCTGTTGGGATTTTGCTTGCAGAGAACTGAAAGGCTTCTCATTTATGAGTTTGTACCAAATGCCAGCCTTGACCAATTCATTTTTGATTTCACGAAACGGACACTATTAGACTGGGAAAAACGATTCAAAATCATAAATGGAACTGCACGAGGACTTCTTTACCTTCACGAAGATTCTCGCCTTCGAATCATACATCGGGATCTCAAAGCTAGTAATATTTTGTTGGATGAAGAAATGAATCCAAAGATTGCTGATTTTGGTATGGCAAGATTGTTTGAAGTAGACGAGACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGTTACATGGCTCCGGAATATTTAATGCACGGCCAATTCTCGATTAAATCGGACATCTTTAGCTTTGGTGTTTTGATACTTGAAATCGTGAGTGGCAAGAAAAATAGTTGCTTTCGCAATGGAGAAAAGATAGAAGATCTCTCAAGCTTTGCATGGAAAAATTGGAAGGCTGGAACATCTAAAAACGTCATAGATTCATCACTTAGTGTTGGTTCAAATGTTGAAATGTTAAAATGCATCCATATTGGATTATTGTGCGTTCAAGAGAATGCAGCAGATCGTCCAACGATGGCTACCATTGTTCTGATGCTTAGTAGCATGTCCCTCAGTCTTCCTGTACCATCGGAACCAGCATTCTTCATGCATAGTAACTTTGATGAATCCACCACACAATCAAAGACAAACCAATGGTTGGAAATGAACGAGAAGGCTAATGATCATTCTGAAAGCATACCCCTCCAATCTTTAGCTGATTCTTCAATTAGGGACTTCAGTCCTCGCTAG 2034 41.69 MGTSKYLLFLCLILIFMVSTTVSQTDIITHSCSNTGNYTTNSVYKQNLDNLLSSIASNTEIDYGFYNFSAGQDPDRVNAIALCLADLTVDECRRCIQNSTRRILEDCPNQKEAIGWYTVCMVRYSNRSIFRVGNDRVLGPVFVSGQTASDIDGYTRSLRTLLQRLRNEASSGDSRHKYAVGEVEATNLDNIFGFVQCTPDLSSVDCNNCLMKAAENVRNGSMGTRIFSTSCFLRYETNDIFYNTESLPPTAGGGGATPPPMSSPPLPPTPGNKTRTVIIVVVSIVSVIILVVAIFIILRLRKRKNRKSTDKFEGVVIGDATDEISSVETIQFDFETIKIATNDFSSENKLGQGGFGAVYKGKLPNGQRIAVKRLANNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQRTERLLIYEFVPNASLDQFIFDFTKRTLLDWEKRFKIINGTARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFEVDETQGNTSRIVGTYGYMAPEYLMHGQFSIKSDIFSFGVLILEIVSGKKNSCFRNGEKIEDLSSFAWKNWKAGTSKNVIDSSLSVGSNVEMLKCIHIGLLCVQENAADRPTMATIVLMLSSMSLSLPVPSEPAFFMHSNFDESTTQSKTNQWLEMNEKANDHSESIPLQSLADSSIRDFSPR* 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28824485 28827325 + CsaV3_6G049310.1 Csa06g03545 535172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03545 677 Gene3D Phosphorylase Kinase; domain 1 312 419 - -
Csa06g03545 677 SMART serkin_6 344 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03545 677 SUPERFAMILY Protein kinase-like (PK-like) 332 649 IPR011009 -
Csa06g03545 677 Pfam Salt stress response/antifungal 149 237 IPR002902 -
Csa06g03545 677 Pfam Salt stress response/antifungal 32 126 IPR002902 -
Csa06g03545 677 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Csa06g03545 677 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 8 654 - -
Csa06g03545 677 Pfam Protein tyrosine and serine/threonine kinase 347 612 IPR001245 GO:0004672|GO:0006468
Csa06g03545 677 ProSiteProfiles Gnk2-homologous domain profile. 136 240 IPR002902 -
Csa06g03545 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Csa06g03545 677 Gene3D Transferase(Phosphotransferase) domain 1 420 621 - -
Csa06g03545 677 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Csa06g03545 677 MobiDBLite consensus disorder prediction 246 269 - -
Csa06g03545 677 ProSiteProfiles Protein kinase domain profile. 344 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03545 677 CDD STKc_IRAK 350 611 - -
Csa06g03545 677 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 654 - -
Csa06g03545 677 MobiDBLite consensus disorder prediction 253 269 - -
Csa06g03545 677 Gene3D - 140 239 IPR038408 -
Csa06g03545 677 Gene3D - 24 128 IPR038408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01127 Csa-Chr1:6949724 Csa06g03545 Csa-Chr6:28824485 0 dispersed
Csa06g03545 Csa-Chr6:28824485 Csa06g03550 Csa-Chr6:28849942 2.93E-55 dispersed
Csa06g03547 Csa-Chr6:28834204 Csa06g03545 Csa-Chr6:28824485 6.88E-54 dispersed
Csa06g03548 Csa-Chr6:28838459 Csa06g03545 Csa-Chr6:28824485 5.40E-37 dispersed
Csa06g03545 Csa-Chr6:28824485 Csa06g03546 Csa-Chr6:28828428 0 tandem
Csa01g01114 Csa-Chr1:6892215 Csa06g03545 Csa-Chr6:28824485 3.46E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78435 PF07714 PK_Tyr_Ser-Thr 3.60E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03545 - - csv:116404634 1263.44