Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03546 ATGGAAAGCTTCAATTTGAGAAAGACGCTGTTCTTCCTCTCCTTCTTTCTCGCAAAGTTGGTGTTTCCCACAATTTCTCAGCCACCCTTTTTTGACAAAGCTTGCTCCGACAAAGGCAATTACACCACCAACAGCCCTTTCAAGAAAAATCTCGACGCCGTACTTTTCTCCCTCTCTTCCAACAATCACTTTGATTCCGGTTTCTACAATGCCTCCTCTGGAGAAAATCCCGACAGAGCCACCGCTATGGCCCTTTGTCGTGGAAATGTTGCCTTTGAAAAGTGCAGGAGTTGCGTGAATGATTCAGCTCACAGGATTATACAAGAATGTCCGAACCAGAAGGAAGCTGTGGGATGGTACCAAGATTGCCAAATTCGCTACTCAAACAACTCTATTTTCGGTGTCAGGGACAGCTCTGTGATGCGAGCATATATGAACCTTCAAAAATCTCCAGACCCAATTGGTTTCAGTCAGACACTGAGGAGCTTGTTGGATGGACTACGAAACGAAGCCGCCTCAGGGACTTCTACTCGAAAATCTGCGGCCGGTCAATTGGCCGTACCTAGTCCCAGTGTGGACACGATATACGCTCTTGTTGATTGTTTTCCTGATTTGTCATCGTTGGATTGTAATGGTTGTCTCAGTCAGCTTCAAAGCTATATTCCCGCTTGTTGTAATGCTAGCATAGGGGCGAGAATAACTGCAACTAGTTGCCAATTGAATTATGAGATCCAGCCTTTCTTTGAATTGTCTCCGCCTCCACCACCATCACAGCCTCCGTCCGTGGCGGCACAGCCTCCACCATCAGCTGTTAAAGCCCCCTCCCCAACTTCACCTTCAAACGAGGGAAGTAATGGCAAAACAGCTAGAACGGTTATAATTGTTGTGGTCTCCGTCGTTTCAGCCAGCATTCTCATTGTTGGCATTTGCATTATTTTGAGACTGAGGAAGCGAAAGCACAAAACAACACTACAAAAGTCTGAGAGTGTTGCTCATGGAGATGCTACTAGTGAAATTAGTACTGCGGTGACGATTCAATTTGATTTTGACACCATTAAAATTGCAACAAATGACTTCTCAGATGAAAATAAGCTAGGTCAGGGTGGATTTGGAGCGGTTTACATGGGTAAGCTACTTAATGGACAACATATTGCAGTGAAGAGGCTTGCACATAATTCACAACAAGGAGATGTTGAATTCAAAAATGAAGTTCTTTTGGTGGTCAAACTTCAACATCGAAACTTGGTTAGGCTACTGGGATTTTGCTTGCAAGGACGTGAAAGACTTCTCATATATGAATTTGTACCAAATGGCAGCCTAGACCACTTCATATTTGATTTTGAAAAGCGGAGACTCCTGGATTGGGAAAAACGATACAAAATCATAAATGGTGTTGCACGAGGACTTCTTTACCTTCATGAAGATTCACGCCTTCGAATCATACATCGTGATCTCAAAGCTAGCAATATTTTGTTGGATGGAGAAATGAATTCAAAGATTGCAGATTTTGGTATGGCAAGATTGTTCAAAGTAGACGAGACTCAAGGCAATACAAGTAGAATTGTAGGAACATATGGCTATATGGCTCCTGAGTATATAATGCATGGACAATTTTCAGTGAAATCAGACGTTTTTAGTTTTGGTATACTAGTTCTTGAAATTGTGTGTGGCCAAAAAAACAATTCTTTTCACAACGGAGATCGAAAAACCGAAGATCTCTCCAGCTTTGCATGGAAAAATTGGAAGGCAGGGACAAGTACAAATGTGATAGATTCGACACTTATTGTTGGTTCAAGGATTGAAATGATAAGATGCATTCATATTGGACTATTATGTGTTCAAGAAAATGTAGCAAATCGGCCAACAATAGCTTCAGTGGTTTTGATGCTAAGCAGTTCTTCTCTCAGTCTCCCGATACCCTCTGAGCCTGCATTCTTCATGGATATTAACACCAATGAATCTAACTCAGATGGACGACATGCCAGTTATTCTACAGCAAAATCTAATCAAATTTCTGAGAATGAAGCCTCAAGTACTGAGCTCTACCCTCGCTAA 2055 42.19 MESFNLRKTLFFLSFFLAKLVFPTISQPPFFDKACSDKGNYTTNSPFKKNLDAVLFSLSSNNHFDSGFYNASSGENPDRATAMALCRGNVAFEKCRSCVNDSAHRIIQECPNQKEAVGWYQDCQIRYSNNSIFGVRDSSVMRAYMNLQKSPDPIGFSQTLRSLLDGLRNEAASGTSTRKSAAGQLAVPSPSVDTIYALVDCFPDLSSLDCNGCLSQLQSYIPACCNASIGARITATSCQLNYEIQPFFELSPPPPPSQPPSVAAQPPPSAVKAPSPTSPSNEGSNGKTARTVIIVVVSVVSASILIVGICIILRLRKRKHKTTLQKSESVAHGDATSEISTAVTIQFDFDTIKIATNDFSDENKLGQGGFGAVYMGKLLNGQHIAVKRLAHNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQGRERLLIYEFVPNGSLDHFIFDFEKRRLLDWEKRYKIINGVARGLLYLHEDSRLRIIHRDLKASNILLDGEMNSKIADFGMARLFKVDETQGNTSRIVGTYGYMAPEYIMHGQFSVKSDVFSFGILVLEIVCGQKNNSFHNGDRKTEDLSSFAWKNWKAGTSTNVIDSTLIVGSRIEMIRCIHIGLLCVQENVANRPTIASVVLMLSSSSLSLPIPSEPAFFMDINTNESNSDGRHASYSTAKSNQISENEASSTELYPR* 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28828428 28832251 + CsaV3_6G049320.1 Csa06g03546 535173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03546 684 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Csa06g03546 684 ProSiteProfiles Protein kinase domain profile. 359 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03546 684 MobiDBLite consensus disorder prediction 249 274 - -
Csa06g03546 684 MobiDBLite consensus disorder prediction 249 286 - -
Csa06g03546 684 SMART serkin_6 359 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03546 684 CDD STKc_IRAK 365 623 - -
Csa06g03546 684 Pfam Salt stress response/antifungal 150 243 IPR002902 -
Csa06g03546 684 Pfam Salt stress response/antifungal 35 129 IPR002902 -
Csa06g03546 684 SUPERFAMILY Protein kinase-like (PK-like) 340 630 IPR011009 -
Csa06g03546 684 Pfam Protein tyrosine and serine/threonine kinase 362 578 IPR001245 GO:0004672|GO:0006468
Csa06g03546 684 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Csa06g03546 684 Gene3D Transferase(Phosphotransferase) domain 1 435 637 - -
Csa06g03546 684 Gene3D - 137 247 IPR038408 -
Csa06g03546 684 Gene3D - 29 131 IPR038408 -
Csa06g03546 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Csa06g03546 684 ProSiteProfiles Gnk2-homologous domain profile. 138 247 IPR002902 -
Csa06g03546 684 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 663 - -
Csa06g03546 684 Gene3D Phosphorylase Kinase; domain 1 318 434 - -
Csa06g03546 684 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 9 663 - -
Csa06g03546 684 MobiDBLite consensus disorder prediction 655 684 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01114 Csa06g03546 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01116 Csa-Chr1:6903507 Csa06g03546 Csa-Chr6:28828428 3.79E-180 dispersed
Csa01g01128 Csa-Chr1:6962082 Csa06g03546 Csa-Chr6:28828428 0 dispersed
Csa06g03546 Csa-Chr6:28828428 Csa06g03550 Csa-Chr6:28849942 3.23E-74 dispersed
Csa06g03545 Csa-Chr6:28824485 Csa06g03546 Csa-Chr6:28828428 0 tandem
Csa06g03546 Csa-Chr6:28828428 Csa06g03547 Csa-Chr6:28834204 6.60E-46 tandem
Csa06g03332 Csa-Chr6:27848598 Csa06g03546 Csa-Chr6:28828428 9.53E-49 transposed
Csa06g03546 Csa-Chr6:28828428 Csa07g00380 Csa-Chr7:2825028 3.63E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78436 PF07714 PK_Tyr_Ser-Thr 1.80E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03546 - - csv:101208368 1288.86