Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03549 ATGGGAAGCTTACGTTTGATCAAACCCCTTTTCTTCATTCTCGCAGCCGCACACTTCATATTTCCCACTACTTCTCAGCCAGATTTTTTATTCCGCACCTGTTCCAACAACAGCAACTACACAAAAAACAGCACTTTCAGCAAAAACCTCAGCAACGTACTTCTCTCCATCTCTTCCAACACGCGTTTCAATAATTACAGTTTCTATAACGCCACTTCCGGCCACAACCCCGACCGAGCCACCGCTCTAGCTCTTTGCCGTGGAGGCGTTCCCTTAGAACAATGTAGAAGCTGTGTCTATAACTCCACCCTCAGAATCACTCAAGATTGTCCATACCAGAAAGAAGCAGCGGGATGGTATCAAGACTGTCAAATTCGTTACTCAAACAACTCTATTTACGGCATGGAAGACAGCAGTCCCCAGGTTTTCTTCTGGAACCTTCGAACAGCAGATGATCCGGTGGGGTTCAATGATGCGTTGTGGAATTTGCTTGATGGGCTGAGGAAGGAGGCGGCGTTGGGGAGCTCTGTTCTGAAGTCGGCTTGGGGAGGGGAGAAGATTCGAAGTCCAAGTATGGATACAGTTTATGGGTTGGTTGATTGCTATCCTGATTTGTCTTATTTGGGTTGTTTTGATTGCCTTCGTAATCTTCAAACTATTATCCCAAGTTGTTGTAATGCGAGTATAGGGGTGAGATTAATTGCAACTAGTTGTCAACTCAATTATGAGTTCCACCCCATTTATCCCCTACCTCCAACTCCACCCCCGCCTCCTTATTCTCCTCCACCGCCTCCTTCTCCTCTGGCCTTGCTATCTCCAACTTCGTCTCCGAAACCTGGAAATAACGACAATACTGGTAGAACTAAAACTATTGTAATCATCACAGTGACGGTCGTTTCTGTTGCCATTCTGCTTGTTGCCATTTTTATCATTTTGATATTGAGGAAGCAAAATCACAAGAGACCATCAGACAATTTTGAAGATATATCTTATGAAGACACCGAAAATGAAATTAGCAGTATGGAGATGATTCAATTTGATTTTGATAGCATTAAAGCCGCAACAGATGACTTCGCAATTGAAAACAAGCTTGGACAAGGTGGATTTGGAGTTGTTTATAAGGGTCAGTTACCTAATGGACAACTTATAGCTGTGAAGAGGCTTGCGAATAATTCACAACAAGGAGATGTTGAATTCAAAAATGAAGTCCTATTGATGCTAAAGCTTCAACATCGAAACTTGGTTAGGCTAATGGGATTCTGTTCGCAACAAACCGAAAGAATTCTCATATATGAGTTTGTAGAAAATGGCAGTCTTGACCACTTTTTATTTGATTTTGAAAAGCGAAGACTCTTAGATTGGGAAACACGTTACAAAATCATAAATGGCATTGCACGAGGGCTTCTTTACCTTCATGAAGATTCTCGACTTCGAATCGTACATCGTGATCTTAAAGCTAGCAACATTTTATTAGATATAGATATGAATTCAAAGATTTCAGATTTTGGTATGGCAAGATTGTTCGAAGTAGACCAGACTCGAGGCAATACAAGTAGAATCGTAGGAACTTATGGCTATATGGCTCCCGAATATGTAATACATGGACTTTTTTCGGTAAAATCAGATGTCTTTAGCTTTGGTGTTTTGGTCCTCGAAACTGTAAGTGGTAGAAAAAACAGTAATTTTTGCAGTGGAGAAACCTCGGAAGATCTCTCAAGCTTCGCATGGACAAATTGGAGAGCAGGAACAATTTCGAATGTCATAGATTCAACACTTACCTCTGGTTTAAGATTTGAGATGATACGATGCATTCACATTGGACTATTGTGTGTACAAGAAAATATAGCAAATCGACCCACAATGACTTCAGTAGTTATGATGCTAAGTAGTGCTTCTCTCACTCTTCCTATACCCTCTAAACCAGCATTTTTTATGCATACTACTACAAATAGATATGACACAACGTTGAGATCAGATGAATCTAATAGTGAAAGCGTGTCTGATCAATATTCGAGAAATAATATTTCAATCACAGAAATTCATCCTCGTTAG 2052 40.59 MGSLRLIKPLFFILAAAHFIFPTTSQPDFLFRTCSNNSNYTKNSTFSKNLSNVLLSISSNTRFNNYSFYNATSGHNPDRATALALCRGGVPLEQCRSCVYNSTLRITQDCPYQKEAAGWYQDCQIRYSNNSIYGMEDSSPQVFFWNLRTADDPVGFNDALWNLLDGLRKEAALGSSVLKSAWGGEKIRSPSMDTVYGLVDCYPDLSYLGCFDCLRNLQTIIPSCCNASIGVRLIATSCQLNYEFHPIYPLPPTPPPPPYSPPPPPSPLALLSPTSSPKPGNNDNTGRTKTIVIITVTVVSVAILLVAIFIILILRKQNHKRPSDNFEDISYEDTENEISSMEMIQFDFDSIKAATDDFAIENKLGQGGFGVVYKGQLPNGQLIAVKRLANNSQQGDVEFKNEVLLMLKLQHRNLVRLMGFCSQQTERILIYEFVENGSLDHFLFDFEKRRLLDWETRYKIINGIARGLLYLHEDSRLRIVHRDLKASNILLDIDMNSKISDFGMARLFEVDQTRGNTSRIVGTYGYMAPEYVIHGLFSVKSDVFSFGVLVLETVSGRKNSNFCSGETSEDLSSFAWTNWRAGTISNVIDSTLTSGLRFEMIRCIHIGLLCVQENIANRPTMTSVVMMLSSASLTLPIPSKPAFFMHTTTNRYDTTLRSDESNSESVSDQYSRNNISITEIHPR* 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28841610 28844970 + CsaV3_6G049350.1 Csa06g03549 535176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03549 683 MobiDBLite consensus disorder prediction 655 683 - -
Csa06g03549 683 Pfam Salt stress response/antifungal 155 243 IPR002902 -
Csa06g03549 683 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Csa06g03549 683 ProSiteProfiles Gnk2-homologous domain profile. 138 247 IPR002902 -
Csa06g03549 683 CDD STKc_IRAK 364 628 - -
Csa06g03549 683 Pfam Protein tyrosine and serine/threonine kinase 360 626 IPR001245 GO:0004672|GO:0006468
Csa06g03549 683 MobiDBLite consensus disorder prediction 253 272 - -
Csa06g03549 683 ProSiteProfiles Gnk2-homologous domain profile. 28 132 IPR002902 -
Csa06g03549 683 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 10 659 - -
Csa06g03549 683 SUPERFAMILY Protein kinase-like (PK-like) 346 665 IPR011009 -
Csa06g03549 683 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Csa06g03549 683 Gene3D - 27 131 IPR038408 -
Csa06g03549 683 Gene3D - 141 246 IPR038408 -
Csa06g03549 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Csa06g03549 683 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 659 - -
Csa06g03549 683 Gene3D Phosphorylase Kinase; domain 1 323 433 - -
Csa06g03549 683 MobiDBLite consensus disorder prediction 253 284 - -
Csa06g03549 683 Gene3D Transferase(Phosphotransferase) domain 1 434 635 - -
Csa06g03549 683 SMART serkin_6 358 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03549 683 ProSiteProfiles Protein kinase domain profile. 358 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01116 Csa06g03549 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01123 Csa-Chr1:6934313 Csa06g03549 Csa-Chr6:28841610 1.52E-13 dispersed
Csa06g03332 Csa-Chr6:27848598 Csa06g03549 Csa-Chr6:28841610 6.20E-47 dispersed
Csa06g03549 Csa-Chr6:28841610 Csa06g03551 Csa-Chr6:28857428 3.15E-145 dispersed
Csa07g00382 Csa-Chr7:2839288 Csa06g03549 Csa-Chr6:28841610 1.51E-31 dispersed
Csa06g03548 Csa-Chr6:28838459 Csa06g03549 Csa-Chr6:28841610 6.46E-23 tandem
Csa06g03549 Csa-Chr6:28841610 Csa06g03550 Csa-Chr6:28849942 5.50E-90 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78437 PF07714 PK_Tyr_Ser-Thr 1.70E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03549 - - csv:105434447 894.034