Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03550 ATGGTCTTCTTTATTCTCGTCCTCGTCGTCCAACACTCAATGTTTCCCACAACCAATTCTCAGCCAGACTTTACATACCACAGCTGTTCCAACAATGCCAACTACACCAACAACAGCCCTTTCAAGAAAAATCTCCACAACGTACTTCTCTCCATCTCTTCCAAAACCACCCAACTTGATTACGGTTTGTTCTACAATGCCACTTCTGGCGAATATCCTGATCGAGCTACCGCTCTTGCTCTTTGCCGTGGAGGCGTTTCATTAAAGCAATGTAGAAGCTGTGTTTATAACTCCACGCTGAGGATTACTAAAGATTGTCCAAAGCAGAGAGAAGCAGAGGGATGGTACTCGGATTGTCAAATTCGTTACTCAAACAACTCTATTTATGGTGTCTTAGACACCACTATCAAGTACGTGAGGTGGAACACTCAAAAAGCACTAAACCCACGTGGGTTCAATAAGGTGCTGCGCAGTTTGTTTGATGGGCTGGGGAGGGAGGCTGCGTCGGGGAGCTCTGTTCAGAAGTCGGCTTGGGGAGATAAGAAGGTTCCAAGTTCAAACGTGGATATCGTATATGGATTGGTTGATTGTTTTCCTGATTTGTCTTACTTGGATTGTTTGGACTGCCTCAATAGGCTTCAAAATTTTCTTCGTACTTGTTGCAATGACATAAACAGTAGCAGTACAGGTAGAAGTAGAAATAAAAGTGTTGCAGTACTCGTTGTGGTGGCGATAGTTCCTACTATCATTCTTCTTGTTGCCATTTTCATCATTTTGATATTGAGGAAGCGAAAGCACAAAAGACCATTAGACAACTTCGAAGAGTATGTAATTATTTTGAAAGTTGCTTTTGATTTTGAGAAAATGGATATGGGAAATTTGAGTTTGGGATCAAGGCTTTTCCTTCTCTTCTCTCTTTGTTCACAATTGTTGTTTATAACCACAACATCTCAGCCCGACTTCTTTTATCACATCTGTTCAAAAAAAGGAAACTACACCAACAACAGCCCTTTCGAGAAAAATCTTGACCATGTTCTTGCTTCAATCTCCTCCAATTCCATCACCGACACGCGCCAGGTCGACTACGGTTTCTATAACGCAACCTCCGGAGAAGATCCTGACACAGCCAACGCTAAGGTTCTTTGTCGTAAAGGATGTCCCTTGGAACAATGCAGAACTTGCGCTAATAACTCAGTTCATAGAATTAGACAAAACTGTCCAAACCAGAAGGAAGGTGCAGGATGGTACGGCGATTGCCAGATTCTTTACTCAAATAACTCTGTTCACGATGAGACAGACTTGAGTGCGTTTCAAATTTTATACAACACCCGTGTAGCCCCAGATCAGAACGGTTTCAATGAGGAACTCAGAGACTTATTGGATGGACTGCGGGTGGAAGCTGCATCAGGGACTTCGATTCGGAAGTCTGCAAGCGGAGATGTGAAGCTTCAAAATCCGAATACTTATACTATATATGGGCTTGTTGATTGTTTTCCCGACATGTCGTTCTTCAGTTGTGATGTCTGCCTCAGTCGGCTTCAAAGTAATCTTGCTTCTTGTTGTAGCGGCAGCATAGGAGCAAGATTGATTGCAACTAGTTGTCAAATCGGTTATGAAATTCACCCTCTCTATGCATCACTTCTCTCTCCACCCCCATCCCCGCTCCCGCTTCAGCCGCCAGCTTCTAATCTCCCCCCTTCATCTCCCCTGCCAACACAAGGAAATAATAGCAATACTGTTAGAATAGTTATAATTGTTGCAGTCTCCATCGCTGCTGTCATCATTCTCCTTGTTGGGATTTGCTTGGTTCTGAAATTCAGAAAAAGAAAGCAGAAAGGACTACTAAGAAATTTTGGAGATGTTGATGTTGGAGATGCCAGTGATGAAATTAGCATTGTGAACACAATTCAATTTGATTTTGATGTCATTAAAGATGCAACAAATGACTTCTCAAATGAAAACAAGCTAGGACAAGGTGGATTTGGAGCTGTTTACAGGGGAAAGCTACCTAATGGACAACATATTGCAGTGAAGAGGCTTGCACATAATTCACAACAAGGAGATGCTGAATTCAAAAATGAAGTCCTTTTGGTAGTCAAACTTCAACATCGCAATTTGGTTAGGCTATTGGGATTCTGCTTGCAAGGAAGTGAAAGACTTCTCATTTATGAGTTTGTACCAAATGGCAGCCTTGACCATTTCATATTTGATTTTGAGAAGCGTATATTGTTGGATTGGGAAAGACGATACAAAGTTATAAATGGCACTGCACGAGGACTTCTTTACCTTCACGAAGATTCTCGTCTTCGAATCATTCATCGTGATCTCAAAGCTAGCAATATTTTGTTGGATGAAGAAATGAATCCAAAGATTGCCGATTTTGGTCTAGCAAGATTGTTCGAAGTAGATGAAACTCAAGGCAATACAAGTAGAATTGTGGGGACTTATGGCTATATGGCTCCTGAGTATATAGCGCATGGACAATTTTCGATAAAATCCGATGTCTTTAGTTTTGGTGTTTTGGTTCTTGAAATTGTGAGTGGTCAAAAAAATAATTGTTTTAGCCACGGAGAAAATACAGAAGATCTCACTAGCTTTACTTGGAATAATTGGAGGGCAGGAACAAGTACAAATGTCATAGATTCAACACTTGGTGTTGGTTCGAGAATTGAAATGATAAGATGCATTCACATTGGACTATTGTGTGTTCAAGAAAATGTAGCAAACCGACCAACAATGGCTTCAGTGGTTATGATGCTAAGTAGCTCTTCTCTTACTCTCCCTATACCCTCTAAGCCTGCATTCTTCATGGATAGTATTGTCACCAATGGATCCAACACAAGTGAGACTAATCGTTCTAAAAGTACAACTCTTCAACATTCAGAGAACGAAGCTTCAATTACAGAGCTTCATCCTCGTTAA 2922 41.2 MVFFILVLVVQHSMFPTTNSQPDFTYHSCSNNANYTNNSPFKKNLHNVLLSISSKTTQLDYGLFYNATSGEYPDRATALALCRGGVSLKQCRSCVYNSTLRITKDCPKQREAEGWYSDCQIRYSNNSIYGVLDTTIKYVRWNTQKALNPRGFNKVLRSLFDGLGREAASGSSVQKSAWGDKKVPSSNVDIVYGLVDCFPDLSYLDCLDCLNRLQNFLRTCCNDINSSSTGRSRNKSVAVLVVVAIVPTIILLVAIFIILILRKRKHKRPLDNFEEYVIILKVAFDFEKMDMGNLSLGSRLFLLFSLCSQLLFITTTSQPDFFYHICSKKGNYTNNSPFEKNLDHVLASISSNSITDTRQVDYGFYNATSGEDPDTANAKVLCRKGCPLEQCRTCANNSVHRIRQNCPNQKEGAGWYGDCQILYSNNSVHDETDLSAFQILYNTRVAPDQNGFNEELRDLLDGLRVEAASGTSIRKSASGDVKLQNPNTYTIYGLVDCFPDMSFFSCDVCLSRLQSNLASCCSGSIGARLIATSCQIGYEIHPLYASLLSPPPSPLPLQPPASNLPPSSPLPTQGNNSNTVRIVIIVAVSIAAVIILLVGICLVLKFRKRKQKGLLRNFGDVDVGDASDEISIVNTIQFDFDVIKDATNDFSNENKLGQGGFGAVYRGKLPNGQHIAVKRLAHNSQQGDAEFKNEVLLVVKLQHRNLVRLLGFCLQGSERLLIYEFVPNGSLDHFIFDFEKRILLDWERRYKVINGTARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGLARLFEVDETQGNTSRIVGTYGYMAPEYIAHGQFSIKSDVFSFGVLVLEIVSGQKNNCFSHGENTEDLTSFTWNNWRAGTSTNVIDSTLGVGSRIEMIRCIHIGLLCVQENVANRPTMASVVMMLSSSSLTLPIPSKPAFFMDSIVTNGSNTSETNRSKSTTLQHSENEASITELHPR* 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28849942 28856412 + CsaV3_6G049360.1 Csa06g03550 535177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03550 973 ProSiteProfiles Protein kinase domain profile. 650 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03550 973 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 3 226 - -
Csa06g03550 973 Gene3D Phosphorylase Kinase; domain 1 624 725 - -
Csa06g03550 973 Pfam Protein tyrosine and serine/threonine kinase 652 918 IPR001245 GO:0004672|GO:0006468
Csa06g03550 973 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 301 939 - -
Csa06g03550 973 SUPERFAMILY Protein kinase-like (PK-like) 638 950 IPR011009 -
Csa06g03550 973 ProSiteProfiles Gnk2-homologous domain profile. 320 428 IPR002902 -
Csa06g03550 973 ProSiteProfiles Gnk2-homologous domain profile. 434 543 IPR002902 -
Csa06g03550 973 ProSiteProfiles Gnk2-homologous domain profile. 134 248 IPR002902 -
Csa06g03550 973 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 226 - -
Csa06g03550 973 SMART serkin_6 650 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03550 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 771 783 IPR008271 GO:0004672|GO:0006468
Csa06g03550 973 Pfam Salt stress response/antifungal 326 425 IPR002902 -
Csa06g03550 973 Pfam Salt stress response/antifungal 448 539 IPR002902 -
Csa06g03550 973 Pfam Salt stress response/antifungal 149 224 IPR002902 -
Csa06g03550 973 Pfam Salt stress response/antifungal 29 125 IPR002902 -
Csa06g03550 973 MobiDBLite consensus disorder prediction 946 973 - -
Csa06g03550 973 Gene3D - 434 542 IPR038408 -
Csa06g03550 973 Gene3D - 133 237 IPR038408 -
Csa06g03550 973 Gene3D - 21 127 IPR038408 -
Csa06g03550 973 Gene3D - 318 427 IPR038408 -
Csa06g03550 973 MobiDBLite consensus disorder prediction 946 965 - -
Csa06g03550 973 ProSiteProfiles Gnk2-homologous domain profile. 23 128 IPR002902 -
Csa06g03550 973 Gene3D Transferase(Phosphotransferase) domain 1 726 926 - -
Csa06g03550 973 CDD STKc_IRAK 656 913 - -
Csa06g03550 973 ProSitePatterns Protein kinases ATP-binding region signature. 656 678 IPR017441 GO:0005524
Csa06g03550 973 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 301 939 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03545 Csa-Chr6:28824485 Csa06g03550 Csa-Chr6:28849942 2.93E-55 dispersed
Csa06g03546 Csa-Chr6:28828428 Csa06g03550 Csa-Chr6:28849942 3.23E-74 dispersed
Csa06g03550 Csa-Chr6:28849942 Csa06g03552 Csa-Chr6:28863435 2.15E-13 dispersed
Csa06g03549 Csa-Chr6:28841610 Csa06g03550 Csa-Chr6:28849942 5.50E-90 tandem
Csa06g03550 Csa-Chr6:28849942 Csa06g03551 Csa-Chr6:28857428 5.09E-12 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78438 PF07714 PK_Tyr_Ser-Thr 1.90E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03550 - - csv:101207636 1268.45