Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03551 ATGTTCTGTTTCCTCGATTACAGATCTTTCCCAATTTCGTTGCTAATCCTGATTTCAATCTTTGGGCTCAGCCACTCCCATCATTTCGAACCCAAATATAGGTTCCACATCTGTTCAGCGCCAAGTAATAACATAACAAATGCTAATCTGGGTTCGAACCTCAGTGGCTTACTGAGTTCCTTATCAGAAGCTTCATCTGACAGCTTCTACAATATAACTTTCAATGGAATGTACGGTGCAGTCCTTTGTCGAGGCGATATTAACAGCGATAACTGTCACAGTTGTGTCAGTACCGCAAGCAAAGAATTAAGCGTTCGATGCTCTTTAAGAGTTAACGGCACAATATGGTACGATGAGTGTATGCTGAGGTACTCAGACAAGAACTTCTTGGGTACTGTAGAGATGTCGCCAAGATTCCTCATGGGCGATTCTGGGAACCAGACATCGCCGGATGATCGTGACATTGACGGACCTGATCTGTTGTCTCAGATGGCCAGTGAAGCTGCAGGGTTAGAGATGATGTTCAAGGCAAACAAGTTAGATAACCGTGGGACACGCTATGGACTGGTTCAATGCACAAGGGATCTTAACAGTAACCAGTGTGATACATGTTTGACGGCTCTGCTGGAGGAGATCAAGCTGGTTTACAAAGGGAGAGTGGGGTGGAGAATTTTGAGCCAAAGTTGTAGCATAACGTATGAGCAATATCTTTTCTATCAGCTACCAGATTCGCCTCCAGGATCAAGTGCGAAAATGATTGCAGTAATCACTGTATCAACAATTGCTGCAGTAGCAATTCTTGCTATTCTATTGTACTGCTTACATTTGTCCAGAAAGAGACGACAGGGTGAACAAGTTCTGTTGCGAAATTTGGGAGATGCAAATGCCGCAGAATTGATGAAGCAGGATTTGCATTCAAGAGATAGAGACAATGATGAAGACATGCACTACTTCAGTTTCATCACCCTACAGGTTGCCACAAACAACTTTGCCGATGCAAATAGGCTTGGAGAAGGTGGTTTTGGTCCGGTTTTCAAGGGAAAGTTGACGAATGGGGAAGAAATAGCTGTAAAAAGACTGTCTTTGAAGTCGAGTCAAGGTCACGATGAGTTCAAGAATGAAGTAATGGTCATAATGAAGCTTCAACACAAAAATCTGGTCAGACTTTTGGGATGCTGTCTGGAGGGAGAGGAAAAGCTACTTGTCTATGAGTACATGGCAAACACTAGTCTAGATGCCTTCTTATTTGATCCAGTTAAAAGTAAACAACTTGACTGGGTTAAGCGCAACAACATCATCAATGGAGTTGCAAAAGGAATTCTTTACCTACACGAGGACTCTCGACTCAAAATCATTCATAGGGATTTAAAAGCTAGTAACGTGTTGTTGGATGACGAGATGAATGCAAAGATATCAGACTTTGGAACAGCCAGAATTTTTGGAGGCAAGCAAGTTGAGGCTAGCACCAACAGAGTTGTTGGGACTTTTGGATATATGGCCCCAGAATATGCAATGGAAGGAGTGTTTTCAATAAAGTCTGATGTTTACAGTTTTGGGATTTTAATGTTAGAAGTGATAAGCGGAAGAAAGAACAGCGGTTTCTTCAAAGTAGACAATGCACAGAGCCTTCTAGCACAGGCATGGCAACTATGGAAGGAAGGCAGAGAAGAGGAAATGGTTGATCCGAACCTGGTTGGAGAATGCTCTTTAAGCGAAGCTCTGAGATGGATCCAAATCGGTCTGCTATGTGTCCAAGAAGATCCAAACATCAGACCAACCATGTCAATGGTTGTTCTAATGCTTGGAAGCAAATCGATTCACCTTCCCCAACCGTCGAAACCTCCATTCTTTCCGATTGGGTTCCCGACGTCAGCCAACCAATCTTCAACGACTTTACTGGGAACGGGATATCTCTCCAGTCAATCCTCTACCACTGCTTCTATATAG 1947 43.19 MFCFLDYRSFPISLLILISIFGLSHSHHFEPKYRFHICSAPSNNITNANLGSNLSGLLSSLSEASSDSFYNITFNGMYGAVLCRGDINSDNCHSCVSTASKELSVRCSLRVNGTIWYDECMLRYSDKNFLGTVEMSPRFLMGDSGNQTSPDDRDIDGPDLLSQMASEAAGLEMMFKANKLDNRGTRYGLVQCTRDLNSNQCDTCLTALLEEIKLVYKGRVGWRILSQSCSITYEQYLFYQLPDSPPGSSAKMIAVITVSTIAAVAILAILLYCLHLSRKRRQGEQVLLRNLGDANAAELMKQDLHSRDRDNDEDMHYFSFITLQVATNNFADANRLGEGGFGPVFKGKLTNGEEIAVKRLSLKSSQGHDEFKNEVMVIMKLQHKNLVRLLGCCLEGEEKLLVYEYMANTSLDAFLFDPVKSKQLDWVKRNNIINGVAKGILYLHEDSRLKIIHRDLKASNVLLDDEMNAKISDFGTARIFGGKQVEASTNRVVGTFGYMAPEYAMEGVFSIKSDVYSFGILMLEVISGRKNSGFFKVDNAQSLLAQAWQLWKEGREEEMVDPNLVGECSLSEALRWIQIGLLCVQEDPNIRPTMSMVVLMLGSKSIHLPQPSKPPFFPIGFPTSANQSSTTLLGTGYLSSQSSTTASI* 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28857428 28862339 - CsaV3_6G049370.1 Csa06g03551 535178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03551 648 SUPERFAMILY Protein kinase-like (PK-like) 313 628 IPR011009 -
Csa06g03551 648 Pfam Protein tyrosine and serine/threonine kinase 334 599 IPR001245 GO:0004672|GO:0006468
Csa06g03551 648 SMART serkin_6 330 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03551 648 Gene3D Transferase(Phosphotransferase) domain 1 406 608 - -
Csa06g03551 648 ProSiteProfiles Gnk2-homologous domain profile. 135 238 IPR002902 -
Csa06g03551 648 Gene3D Phosphorylase Kinase; domain 1 304 405 - -
Csa06g03551 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Csa06g03551 648 CDD STKc_IRAK 336 601 - -
Csa06g03551 648 ProSiteProfiles Gnk2-homologous domain profile. 32 129 IPR002902 -
Csa06g03551 648 ProSiteProfiles Protein kinase domain profile. 330 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03551 648 Pfam Salt stress response/antifungal 38 126 IPR002902 -
Csa06g03551 648 Pfam Salt stress response/antifungal 172 236 IPR002902 -
Csa06g03551 648 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 14 627 - -
Csa06g03551 648 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 627 - -
Csa06g03551 648 Gene3D - 141 238 IPR038408 -
Csa06g03551 648 Gene3D - 32 129 IPR038408 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03960 Csa-Chr3:34624574 Csa06g03551 Csa-Chr6:28857428 4.21E-101 dispersed
Csa05g02318 Csa-Chr5:25639895 Csa06g03551 Csa-Chr6:28857428 3.42E-109 dispersed
Csa06g03549 Csa-Chr6:28841610 Csa06g03551 Csa-Chr6:28857428 3.15E-145 dispersed
Csa06g03551 Csa-Chr6:28857428 Csa07g00396 Csa-Chr7:2907579 7.21E-134 dispersed
Csa06g03550 Csa-Chr6:28849942 Csa06g03551 Csa-Chr6:28857428 5.09E-12 tandem
Csa06g03551 Csa-Chr6:28857428 Csa06g03552 Csa-Chr6:28863435 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78439 PF07714 PK_Tyr_Ser-Thr 5.30E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03551 - - csv:101207389 1226.08