Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03552 ATGATTCATTTTCTCATTCAAACACCTTCTTCTTGGCCTTTAACTTTACTACTTTTGATTTCAATCTCTGGATTCATACTCCCTTGTTGTAGCCAACGTTATTTATCCTGCTCAGGAGCCAACACAGGTCACCCCAATCTAAATTCAAACATCAATTTCCTATTGGATTCCTTGATCTCTCATGCTTCCTCTCGCACTTTCTACACTGAGACCTCTAATGGAATCCATGGCCTCTTCCTCTGCCGAGGGGATGTTCCCAATGAGACTTGTCGTACCTGCATCGAAGGGGCTAGTCAACAAATCAAGGTCGATTGTGCATCACAAACAAATGGTACCATAGGCTTTGATGAATGTATGTTGAGATTCTCAGTTGTGAACTTCTTTGGAATTCTGGAGATGTCTCCAAGAATACTACTATATAATAGTCTGAATCAATCTACTTTTGAAGACCGCGATTTTGTCGATCTTGCATTGGTGTCTAATTTAGTAAGAGATGCTAAAAATGCAAATTCGATGTTCAAGGAAGGTGAGGTAAATATAGTGGGGGTGGATCAGAGATTTGGATTGGCACAGTGTACAAGAGATATTGGTAAGCGTGATTGTGAGATTTGTTTGACAAATTTAGTGGATTATGCAAAGGGATGTTGCCTAAGGCAACGAGGATGGAGAGTTTTAGCCCCCAATTGTAATTTAAGAGTTGAGGCCTTTCGTTTTTATGGAATTCCAACTCCATCCTTGCCTCTTGATGAAGAAGGAGGGAGCAGAACAAGGATCATAGTCATCACCGTATCAACAGTTGCCGCGACTGCAGTTCTGCTAGGCCTATTGCTTGGCTCATTTTTATGGAGAAAAAAGAGACGGGAGATGGACAGAAGTGACGAGTTTCCTTTGCGAAATGGATCAGATCAACAACCAGTTTACTCACTAAGGCAACATTTTGATGAAACAAATCATGACAATGATGGAGATATGCATTACTTCAACTTTAGTACTCTAAAAGCTGCTACAAATAACTTTTCAGATGTTAATAAACTTGGAGAAGGGGGGTTTGGTCCAGTTTACAAGGGAAAGCTGATGGGTGGTGAGGAAGTAGCAGTGAAAAGACTATCAACAAAATCAAGTCAAGGACATGAAGAGTTTAAGAATGAAGCAAAGGTCATTTGGAAGCTTCAACATAAGAATCTGGTCAGGCTCTTGGGATGTTGTGTTGAAGGAGGAGAAAAACTTCTAGTCTATGAGTACATGGCAAATACTAGCCTTGATGCTTTCTTGTTTGATCCATTGAAGTGCAAACAACTTGATTTTCTCAAGCGCGAAAACATTGTCAATGGGATTGCAAGAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCACAGAGATTTGAAAGCAAGCAATGTACTATTAGATGATGAGATGAACCCAAAAATATCAGACTTCGGAACTGCCAGGATATTTGGAGGCAAGCAAATTGATGCCAGCACCAATAGAATAGTTGGAACATATGGTTATATGGCACCCGAGTATGCTATGGAGGGAGTTTTCTCAGTTAAGTCCGACGTATACAGTTTTGGAGTTCTTATGCTAGAAGTGATGAGCGGGAAGAAAAACATTGGTTTTCTGAACATGGACAGAGCACAGAACCTTCTGTCATATGCGTGGGAGCTTTGGAGTGAAGGAAGAGCAGAGGAAATGATAGACAAGAACTTGAGTGGAGAATGTCCTGAGAGTGAGGCTGTAAAATGGATCCACATAGGGTTGTTGTGTGTGCAAGAAGATCCTAACATCAGGCCTACCATGTCAATGGTTGTTCTAATGCTTGGAAGCAAATCGATTCAGCTTCCTCAGCCATCAAAACCTCCATTTCTTACAAGTAGAGGGTCTCTAAGTAGATATCAATCTTCGACAACTGAAACAGGAACAGGGTTACACACCACAGATCAGTCATCTACTAGTGCTTCTATTTAG 1977 40.92 MIHFLIQTPSSWPLTLLLLISISGFILPCCSQRYLSCSGANTGHPNLNSNINFLLDSLISHASSRTFYTETSNGIHGLFLCRGDVPNETCRTCIEGASQQIKVDCASQTNGTIGFDECMLRFSVVNFFGILEMSPRILLYNSLNQSTFEDRDFVDLALVSNLVRDAKNANSMFKEGEVNIVGVDQRFGLAQCTRDIGKRDCEICLTNLVDYAKGCCLRQRGWRVLAPNCNLRVEAFRFYGIPTPSLPLDEEGGSRTRIIVITVSTVAATAVLLGLLLGSFLWRKKRREMDRSDEFPLRNGSDQQPVYSLRQHFDETNHDNDGDMHYFNFSTLKAATNNFSDVNKLGEGGFGPVYKGKLMGGEEVAVKRLSTKSSQGHEEFKNEAKVIWKLQHKNLVRLLGCCVEGGEKLLVYEYMANTSLDAFLFDPLKCKQLDFLKRENIVNGIARGILYLHEDSRLKIIHRDLKASNVLLDDEMNPKISDFGTARIFGGKQIDASTNRIVGTYGYMAPEYAMEGVFSVKSDVYSFGVLMLEVMSGKKNIGFLNMDRAQNLLSYAWELWSEGRAEEMIDKNLSGECPESEAVKWIHIGLLCVQEDPNIRPTMSMVVLMLGSKSIQLPQPSKPPFLTSRGSLSRYQSSTTETGTGLHTTDQSSTSASI* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28863435 28866429 - CsaV3_6G049380.1 Csa06g03552 535179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03552 658 ProSiteProfiles Gnk2-homologous domain profile. 29 127 IPR002902 -
Csa06g03552 658 Gene3D Phosphorylase Kinase; domain 1 312 414 - -
Csa06g03552 658 MobiDBLite consensus disorder prediction 619 658 - -
Csa06g03552 658 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 35 642 - -
Csa06g03552 658 SMART serkin_6 339 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03552 658 ProSiteProfiles Protein kinase domain profile. 339 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03552 658 ProSiteProfiles Gnk2-homologous domain profile. 133 238 IPR002902 -
Csa06g03552 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Csa06g03552 658 SUPERFAMILY Protein kinase-like (PK-like) 322 638 IPR011009 -
Csa06g03552 658 Gene3D - 30 127 IPR038408 -
Csa06g03552 658 Gene3D - 138 238 IPR038408 -
Csa06g03552 658 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 10 ISOFORM X1 35 642 - -
Csa06g03552 658 Pfam Protein tyrosine and serine/threonine kinase 343 608 IPR001245 GO:0004672|GO:0006468
Csa06g03552 658 CDD STKc_IRAK 345 610 - -
Csa06g03552 658 Gene3D Transferase(Phosphotransferase) domain 1 415 619 - -
Csa06g03552 658 Pfam Salt stress response/antifungal 157 234 IPR002902 -
Csa06g03552 658 Pfam Salt stress response/antifungal 41 123 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03550 Csa-Chr6:28849942 Csa06g03552 Csa-Chr6:28863435 2.15E-13 dispersed
Csa06g03552 Csa-Chr6:28863435 Csa07g00396 Csa-Chr7:2907579 9.80E-134 dispersed
Csa06g03552 Csa-Chr6:28863435 Csa06g03554 Csa-Chr6:28873042 1.45E-11 proximal
Csa06g03551 Csa-Chr6:28857428 Csa06g03552 Csa-Chr6:28863435 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78440 PF07714 PK_Tyr_Ser-Thr 2.10E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03552 - - cmo:103484582 1171.38