Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03565 ATGGCAGAAGATTTTCAAGCTCCTGTTTGCGGCGATAATTGGTGGAACTCTTCCCGGAGTATGTTGGTCGCCGTCGGTGGGTTGTCCCCTTGTTCCGTTGGTATCGCCGACTTATCTTGGCCACCACAACCGCCCTCTGCGGCCACTGATTCCGTCAACAACAATTCATCCATGCTTTTTCAAGATTATTCCACTTTTCAAATGATGGGTTTTGCTCTTTCTTCTTCTACCACTTCCGAACATTGGAATCAATCTCAAGATTTGCTTAATTCGAATGGAATTCCAACGAATTTCTCAAGTGAAAATGGATTGAAGCAAGGAAATGATGGAGATGATTATTTAAATTGTTCGTCCACAAATACAACAAATTGTCAAGGCGGTTTATTTCCTGTTGAGTCAAGTTTATATGGATACTCTTCTCCTTCAACGAAGTTGCTTCAAACTAACTTATATGAGGATGATAATTCTGATCCTCATTCTCTCTTCAATTCTACACCTTCCATTACCACAAATTCCACTACCTTCCCCACAAATATTAATCCTCCTAATCACTTATCTTTATCTTCAACCCCTAATTTTTCTTCTAATTACCTTGTTAAACCCTCACTTCCAAACCCACAACCTCACTTGCAATTCACAAACAATACTCCTTTTTGGAATGCATCTTCTTCAAATTCCATTCCTCAGGGTATTGCTTCCTTGCTTGAAGATAAAAATAACCCTAAATCCCAAAATAATACACTTGCTTTCAAGTCTGTGAATGAAGATGGTCAAGATCAAGTGAAGAAAGGCGATAAAAATAGTGCAATAACGACTGAACCAACCGTGTTTAAAAGGCCTCGGATTGAAACTCCTTCACCATTGCCAACATTTAAGGTGCGGAAAGAGAAGCTAGGGGACCGAGTCACTGCCCTTCAACAACTGGTTTCACCGTTTGGAAAGACCGATACAGCCTCCGTTCTACACGAAGCCATTGAGTACATAAAGTTCCTCCACGATCAAGTCAGTGTCTTAAGCACACCATATATGAAAAGCAACAATGGAATAACACCCGTCCAACACCAACAGGTATCTGAAAAGGCAAACCATGATAGCCCAAAACAAGATCTGAAAAGCAGAGGCCTTTGCTTGGTGCCAATTTCAAGCACATTCCCAGTGACAAATGCAACCACCACAGATTTCTGGACACCGACGTTCGGCGGAACGTTCCGGTGA 1215 41.65 MAEDFQAPVCGDNWWNSSRSMLVAVGGLSPCSVGIADLSWPPQPPSAATDSVNNNSSMLFQDYSTFQMMGFALSSSTTSEHWNQSQDLLNSNGIPTNFSSENGLKQGNDGDDYLNCSSTNTTNCQGGLFPVESSLYGYSSPSTKLLQTNLYEDDNSDPHSLFNSTPSITTNSTTFPTNINPPNHLSLSSTPNFSSNYLVKPSLPNPQPHLQFTNNTPFWNASSSNSIPQGIASLLEDKNNPKSQNNTLAFKSVNEDGQDQVKKGDKNSAITTEPTVFKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKSNNGITPVQHQQVSEKANHDSPKQDLKSRGLCLVPISSTFPVTNATTTDFWTPTFGGTFR* 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28902722 28905982 + CsaV3_6G049510.1 Csa06g03565 535192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03565 404 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 391 - -
Csa06g03565 404 PANTHER TRANSCRIPTION FACTOR BHLH112 11 391 - -
Csa06g03565 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 346 IPR036638 GO:0046983
Csa06g03565 404 CDD bHLH_AtbHLH_like 288 339 IPR045239 -
Csa06g03565 404 Gene3D - 292 351 IPR036638 GO:0046983
Csa06g03565 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03467 Csa-Chr1:31650489 Csa06g03565 Csa-Chr6:28902722 4.04E-37 dispersed
Csa03g04238 Csa-Chr3:37108680 Csa06g03565 Csa-Chr6:28902722 6.96E-33 dispersed
Csa06g03280 Csa-Chr6:27537459 Csa06g03565 Csa-Chr6:28902722 8.73E-31 dispersed
Csa06g03565 Csa-Chr6:28902722 Csa07g02257 Csa-Chr7:21082838 9.65E-29 dispersed
Csa03g00554 Csa-Chr3:4716554 Csa06g03565 Csa-Chr6:28902722 4.62E-68 transposed
Csa04g00280 Csa-Chr4:1745825 Csa06g03565 Csa-Chr6:28902722 1.21E-32 transposed
Csa05g00946 Csa-Chr5:7900420 Csa06g03565 Csa-Chr6:28902722 4.19E-31 transposed
Csa07g00710 Csa-Chr7:5057906 Csa06g03565 Csa-Chr6:28902722 8.26E-36 transposed
Csa01g01146 Csa-Chr1:7106592 Csa06g03565 Csa-Chr6:28902722 2.90E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03565 - - csv:105435958 808.905