Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03568 ATGGCGGCTCCATATCCTGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGTTCCTCAATCCAACGCTGGCTCGACGCTGGTCACCGGACTTGCCCTATCACCCAATTGCCCCTTCCTCAAAACCCTTCTCTAATACCTAACCATGCCCTTCGCAGCTTAATTTCAAATTTCAACCCTGTTTCCCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCTCAAACCCTAATCTCGATTCTCATCTCTCCTTCTTCCTCTCTTGATTCCAAGCTCGATTGCCTCAATCAACTCGCCAGGGTTTCAAAGCGCGATTCCGCTGTGCGTCGAAGATTGACCGAGTCAGGTGCCGTTTCGGCCGTTCTTAAATGCGTTGGTTCTGACGATCCCAGTCTCCAAGAGAAAGCTCTCTCCCTCTTGCTTAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGTCTCACCGTCGCTGCTCTTCAAGCTAGGTCCGCCGATTGCAGAGCCGTAGCGGCCACGATGCTGACGAGCTTAGCTGTTGTGGAGGTCAACAAAGCTACAATTGGGGCATATCCCTATGCAGTTCGTTCTCTGGTTTATCTCTTACGGAACGGCAACAACAGAGAGCAGAAAGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCTGGGAACCGTTTGCGCGTTGTGGAATGTGGGGCTGTTCCCATTTTGCTTAAAATCGCAAATTCTGGGTTGGATAGAGCAGTGGAGGTTCTGGGGGTTTTGGCTAAGTGCAAGGAAGGTCGAGAAGAGATGCAATGGTTCAAGGGATGTGTGGAGATTTTGAGTCGTGTTTTGAGGAATGGATCACCACGAGGAGTTCAATATGCTCTTCTAACTCTGGCTTCCCTTTGCTGCCATTGCGAGCGGCTCTGCGTGGAGGCAAGAAGAGAAGGCATTTTGGGAATCTGTATGACATTGATTGATGATGATAGTGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGAAAGGGAACACCCCGTGA 1098 49.09 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSKLDCLNQLARVSKRDSAVRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGNNREQKEAATALYAICSFPGNRLRVVECGAVPILLKIANSGLDRAVEVLGVLAKCKEGREEMQWFKGCVEILSRVLRNGSPRGVQYALLTLASLCCHCERLCVEARREGILGICMTLIDDDSEKIRANAANLIHILKGNTP* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28914795 28916896 - CsaV3_6G049540.1 Csa06g03568 535195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03568 365 SUPERFAMILY RING/U-box 3 72 - -
Csa06g03568 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Csa06g03568 365 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Csa06g03568 365 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Csa06g03568 365 Gene3D - 87 212 IPR011989 -
Csa06g03568 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Csa06g03568 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Csa06g03568 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Csa06g03568 365 SMART arm_5 200 241 IPR000225 GO:0005515
Csa06g03568 365 SMART arm_5 242 278 IPR000225 GO:0005515
Csa06g03568 365 SMART arm_5 159 199 IPR000225 GO:0005515
Csa06g03568 365 SMART arm_5 118 158 IPR000225 GO:0005515
Csa06g03568 365 SMART arm_5 279 320 IPR000225 GO:0005515
Csa06g03568 365 Gene3D - 213 365 IPR011989 -
Csa06g03568 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Csa06g03568 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515
Csa06g03568 365 CDD RING-Ubox_PUB 9 50 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03568 Csa-Chr6:28914795 Csa05g01046 Csa-Chr5:10336742 1.88E-57 dispersed
Csa06g03568 Csa-Chr6:28914795 Csa01g02400 Csa-Chr1:21307088 1.71E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03568 - - csv:101213883 670.618