Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03569 ATGGGTAGTGATTGCAGAAAGGTTGTTGGGTTTCTTCAATTCTTTGTTATTTCATTCTTCCTCTGTTCTTCGCCTCTGTTTTGCGATGCTGCAGATTCAATTACAAAGGGTAGAGGTTTAAGAGACGGTAGTAATGAAACCCTCGTATCCCTGGATGACTCCTACGAACTGGGTTTCTTCAGCCCCATAAATTCTTCACTACGATACGTTGGAATATGGTATCACAAGATCGAGGAACAGTCTGTTATTTGGGTTGCGAATAGAGATAGGCCACTCCGTAATAGAAATGGGGTTTTGATAATCGGAGACGACGGGAACTTGGTCGTTCTGGACGGTAACAACTCTGTTTGGACAAGCAATATCACAGCGAATTCGTTTGAGCCCAGAAACTTAACTCTTCTTAACCATGGAGCATTGGTTCTCTCGAGTGGAGACGACTTATCGAAAGTTCATTGGAGCAGCTTCGAACACCCCACGGATACATTTCTTCCCAATATGGTGGTGAAAGTGAACCCACAAATGGGCGAGAAACGAATGTTTATGTCGTGGAAATCAGAGACAGATCCGGCCGTCGGAAATTACTGTCTGGGTGTGGATCCCCGTGGAGCTGTGCAGATCATCGTTTGGAATGGGAATAATCGATGGTGGAGAAGCGGCCACTGGGACAAGCAGATTTTCTCTGGGATTCCAACTATGCGTTCTACGTCGTTGTACGGGTTTAAGATTACCTCTGATGATGGAAATAACATTAGCGTAACTTTTGAAGCACTGAATGATTTGGATAAGCTGAAATTTCAAATTCAGTGGGATGGTAAAGAAGCGCAGCAACGGTTGAATGAAACAACTCGCAAATGGGATACCATTCGTTTACTGCCTTCGAACGATTGCGATTTCTATAATTTTTGTGGAGATTTTGGGGTTTGTTCTGAAAACAGTCGTCTTAAGTGTAGCTGCCCTCAAGGGTTTATACCCAAAAACAAAGAACGATGGGACAAAGGGATTTGGTCAGATGGGTGTCGGAGGAAGACTCCATTGCTTGAGCAGAGAATGAAAAGTAGTCCAAACGGAACTATTGAAGATAGTGAGCAAGATGGATTTGTAGATGTGCTATTTGTGAAATTGCCCGATTTCATAACTGGAATATTTGTGGTGGAGTCCTGTAGAGATAGATGTTCCAGCAATTCTTCGTGTGTTGCATATTCCGATGCTCCTGGAATTGGGTGCGCTACTTGGGATGGACCCTTAAAAGATATTCAGAGATTTGAGGGTGCTGGGAATACTTTGCACCTTCGTATCGCTCATTCTGATTTGACACCTGTAGATAGCGAGAGCAAATTGTCAACTGGTGTGATAGTGGCGATATGTTTTGGAGGAGCAGCTGCCATAGCGATAATAGCATTGCTGCTATGGAAATTCAGAGGCAAAACGAAAGCTGCTACTACAAGTGAACCTCAGAACAAAACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAAAGAACTTTCAGCAGAGCTTTCAGGGCCATACGAATTAGGCATAGAAGGTGAAAATTTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGCTGCAGCTACCGATAACTTTTCTGAGGAAAACAAGCTTGGCCAAGGAGGCTTCGGCCCTGTATACAAGGGAAAGCTTCCATGTGGACAAGAAATTGCTGTCAAGAGGCTTTCAGTCCGGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATTATACTAATTGGAAAGTTACAGCACCGAAACCTCGTCAGATTGTTGGGCTACTGCATTCAAGGAGAGGACAAGTTGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGACTGGTTTCTTTTCGATCCAAACAAGCAGGCACTACTAGATTGGAAAAAACGGTTGTCAATCGTTGAGGGAATTGCACGAGGGCTGCTATACCTTCATCGAGACTCGAGACTTCTTATTATTCATAGAGATTTGAAAGCTAGCAATATTTTACTAGACGAAGACATGAATCCAAAGATATCGGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAATGAGGCGACGAATACAATTCGAGTTGTTGGCACATATGGTTACATGGCTCCAGAATATGCAATGGAAGGTTTATTTTCAGTAAAATCAGACGTATATAGTTTTGGTGTTTTGCTATTGGAATTAATCTGTGGCAGGAGGAACACTAGCTTTCGCTCAACTGAATACTTAACCTTGATTAGCTATGCTTGGAAACTTTGGAATGATGGAAGAGCGATTGAACTTCTTGACCCTTCTATACGCGATTCATCCCCTGAGAATGAAGTATTGAAATGCATACATGTAGCAATGTTGTGTGTTCAAGACTCTCCAGCTTACAGACCAACACTGCAGTCATTGGTTCTAATGCTGGAGAGTGAATCTACGTCTCTGCCACAACCAAGACAACCCACCTATACGTCAACGAGAGCCTCAATTGATATAGATTTGTTTACAGAAGGCCACGACATTGTATCGTCAAATGACGTAACGGTAACAATGTTGGATGGTAGATAA 2571 42.75 MGSDCRKVVGFLQFFVISFFLCSSPLFCDAADSITKGRGLRDGSNETLVSLDDSYELGFFSPINSSLRYVGIWYHKIEEQSVIWVANRDRPLRNRNGVLIIGDDGNLVVLDGNNSVWTSNITANSFEPRNLTLLNHGALVLSSGDDLSKVHWSSFEHPTDTFLPNMVVKVNPQMGEKRMFMSWKSETDPAVGNYCLGVDPRGAVQIIVWNGNNRWWRSGHWDKQIFSGIPTMRSTSLYGFKITSDDGNNISVTFEALNDLDKLKFQIQWDGKEAQQRLNETTRKWDTIRLLPSNDCDFYNFCGDFGVCSENSRLKCSCPQGFIPKNKERWDKGIWSDGCRRKTPLLEQRMKSSPNGTIEDSEQDGFVDVLFVKLPDFITGIFVVESCRDRCSSNSSCVAYSDAPGIGCATWDGPLKDIQRFEGAGNTLHLRIAHSDLTPVDSESKLSTGVIVAICFGGAAAIAIIALLLWKFRGKTKAATTSEPQNKTEVPMFDLSKSKELSAELSGPYELGIEGENLSGPDLPMFNFNCIAAATDNFSEENKLGQGGFGPVYKGKLPCGQEIAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKLLLYEYMPNKSLDWFLFDPNKQALLDWKKRLSIVEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEYLTLISYAWKLWNDGRAIELLDPSIRDSSPENEVLKCIHVAMLCVQDSPAYRPTLQSLVLMLESESTSLPQPRQPTYTSTRASIDIDLFTEGHDIVSSNDVTVTMLDGR* 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28918339 28922573 - CsaV3_6G049550.1 Csa06g03569 535196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03569 856 SMART blect_4 39 158 IPR001480 -
Csa06g03569 856 CDD PAN_AP_plant 359 433 - -
Csa06g03569 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 659 671 IPR008271 GO:0004672|GO:0006468
Csa06g03569 856 Pfam PAN-like domain 361 417 IPR003609 -
Csa06g03569 856 CDD STKc_IRAK 544 810 - -
Csa06g03569 856 CDD B_lectin 43 158 IPR001480 -
Csa06g03569 856 Pfam D-mannose binding lectin 82 184 IPR001480 -
Csa06g03569 856 Gene3D Transferase(Phosphotransferase) domain 1 614 826 - -
Csa06g03569 856 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 189 IPR036426 -
Csa06g03569 856 SUPERFAMILY Protein kinase-like (PK-like) 523 832 IPR011009 -
Csa06g03569 856 SMART serkin_6 538 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03569 856 ProSiteProfiles Protein kinase domain profile. 538 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03569 856 Gene3D Phosphorylase Kinase; domain 1 513 613 - -
Csa06g03569 856 PIRSF SRK 5 856 IPR024171 GO:0004674
Csa06g03569 856 ProSiteProfiles Bulb-type lectin domain profile. 31 154 IPR001480 -
Csa06g03569 856 Pfam Protein tyrosine and serine/threonine kinase 541 807 IPR001245 GO:0004672|GO:0006468
Csa06g03569 856 Pfam Domain of unknown function (DUF3403) 811 856 IPR021820 GO:0004674
Csa06g03569 856 Pfam S-locus glycoprotein domain 216 326 IPR000858 GO:0048544
Csa06g03569 856 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 12 856 - -
Csa06g03569 856 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 12 856 - -
Csa06g03569 856 Gene3D - 27 155 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01166 Csa-Chr1:7223278 Csa06g03569 Csa-Chr6:28918339 0 dispersed
Csa01g01168 Csa-Chr1:7234621 Csa06g03569 Csa-Chr6:28918339 0 dispersed
Csa06g03569 Csa-Chr6:28918339 Csa03g04115 Csa-Chr3:36063471 0 dispersed
Csa05g01147 Csa-Chr5:11773292 Csa06g03569 Csa-Chr6:28918339 1.24E-103 transposed
Csa07g02184 Csa-Chr7:20623287 Csa06g03569 Csa-Chr6:28918339 5.35E-22 transposed
Csa01g01157 Csa-Chr1:7173741 Csa06g03569 Csa-Chr6:28918339 0 wgd
Csa06g03569 Csa-Chr6:28918339 Csa07g00396 Csa-Chr7:2907579 1.09E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78441 PF07714 PK_Tyr_Ser-Thr 6.10E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03569 - - csv:101207147 1709.12