Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03601 ATGGGTTGTGCTAATTGGAATTTGCTTATGAAGATCCTAATTGGGCTGCTCTTGGTTTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTTCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACATCTTTACAACTCAGTGGATTGAATTTAGGAGGAGAGCTAGGCACTAGCTTGGACCAATTCGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCCACACTGCCCCCTACACTGAGAAGTCTTTCTTTATCAGCCAATCAATTCACTGGAAGCATTCCCCCTGCACTGGCCTCGCTAGCACAACTAATGGACCTGTCACTAAATAACAACCTTCTTACCGGGGCAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACATGTCAAGCAACAACTTGAGTGGTCAGCTGCCTCCTTCGGTGGCTGATTTGTTATCCCTTACTACATTGCACTTGCAGAACAATCAACTTTCTGGGTTGCTTGACCCTCTACAGGATCTTCCGTTGTCAGACTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTCAATACTACAATAATTCCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACCACCAACTAGACAAGCAGGTGGAGGCCAGCCATTGTGGCCTGGGACTCCTGAATCATCAGATGGAGCAAGGAGCTTTTTCTCTGCTAAGCGAATCATTTGGATTGTTATTATTGGGACAGTAATATTAGTAGCATTAGGATTCTGTCTTCTTGTGTCAATATGCTTGAAAAGAAGCAAGCGTCGAAAAGACAACAAGATTGTTCGTGACAACACTGATATGGCTTCTAAATACAAGCCTAAACCCATGAAGCCCTCGGTTGAAGGTGTAGACATGGAGAAAGGTCCAAAGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAACAATGGATTTTACAACCCCAAGGCTACATGATAGACAGGACACAAATGGGAAAAGAAAAGATGCCTCTAATACAAGTTTCCGACGAGACCATACAGAGAGTTCGAGCATAAGCATGGATGACTTCCCTCCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATGGCGGCTGAAGTGCCCAGTAAAGTACCTAGAAAACTGAAAACAAGTTCTTTAAAAGTTTTCACAATCGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAGAGGCATGCTTGGTAGTGTCTATAGTGCTGAACTGCCAAGTGGAAGGCTTCTGGCTGTTAAGAAACTGGATGGATCCTCTTCAACTCATTGGAATGATGATGATTTTCACGACCTGGTGTCTAGTATATGTCAAATTCGGCATGATAACATTGTGGAGCTTGTGGGATATTGTGCTGAGCATGGACAATACCTACTCATTTACGAGTACTGCAAAAATGGCACACTCTATGATGCACTCCATGTTGACAAGGAGATGCATCAAAAGCTTTCATGGAATGTACGTGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTATCATGCACCAAAATTTCAAGTCTGCTAACATTCTCTTGGACAATGAGCTAAAACCACGAGTCTCTGACTCTGGCTTAGCTCGGCTGCTGCCTTCAGCTACTCAGTCATCTGCGCCATCCCTCCCAGCTCAGGGTTATAGTGCTCCTGAATTTGAGCTAGGAACTTACACTTACCAAAGTGATCTTTATAGCTTCGGAGTCGTAATGCTAGAGCTTTTGACTGGTCGAAAGTCTTGCGATCGATCACTGCCTCGAGGAGAACAATTTCTTGTTCGATGGGCTGTTCCAAGGCTCCATGATATCGATGCATTATCACGAATGGTCGATCCATCACTTAATGGCATGTATCCTGCTAAATCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGCATAATGAGAGAGCCTGAATTTCGGCCCCCGATCTCCGAAATTGTACAGGAACTCTTACAAATGCTGTAG 2259 44.18 MGCANWNLLMKILIGLLLVFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITSLQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPPTLRSLSLSANQFTGSIPPALASLAQLMDLSLNNNLLTGAIPDVFQLLNGLNNLDMSSNNLSGQLPPSVADLLSLTTLHLQNNQLSGLLDPLQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTVGPPTRQAGGGQPLWPGTPESSDGARSFFSAKRIIWIVIIGTVILVALGFCLLVSICLKRSKRRKDNKIVRDNTDMASKYKPKPMKPSVEGVDMEKGPKETTLKPLDRDRMKDRTMDFTTPRLHDRQDTNGKRKDASNTSFRRDHTESSSISMDDFPPPPPPPPFPLLSTQEIAKPMAAEVPSKVPRKLKTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYSAELPSGRLLAVKKLDGSSSTHWNDDDFHDLVSSICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKPRVSDSGLARLLPSATQSSAPSLPAQGYSAPEFELGTYTYQSDLYSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPAKSLSRFADIISSCIMREPEFRPPISEIVQELLQML* 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29085557 29090647 - CsaV3_6G049870.1 Csa06g03601 535228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03601 752 PANTHER LEUCINE RICH REPEAT KINASE 2 8 752 - -
Csa06g03601 752 Gene3D Ribonuclease Inhibitor 39 253 IPR032675 -
Csa06g03601 752 SUPERFAMILY Protein kinase-like (PK-like) 453 748 IPR011009 -
Csa06g03601 752 MobiDBLite consensus disorder prediction 421 436 - -
Csa06g03601 752 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Csa06g03601 752 MobiDBLite consensus disorder prediction 270 289 - -
Csa06g03601 752 MobiDBLite consensus disorder prediction 336 436 - -
Csa06g03601 752 Gene3D Transferase(Phosphotransferase) domain 1 554 752 - -
Csa06g03601 752 Pfam Protein tyrosine and serine/threonine kinase 480 748 IPR001245 GO:0004672|GO:0006468
Csa06g03601 752 MobiDBLite consensus disorder prediction 353 417 - -
Csa06g03601 752 SUPERFAMILY L domain-like 35 237 - -
Csa06g03601 752 Gene3D Phosphorylase Kinase; domain 1 439 553 - -
Csa06g03601 752 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 8 752 - -
Csa06g03601 752 ProSiteProfiles Protein kinase domain profile. 476 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03601 752 ProSiteProfiles Leucine-rich repeat profile. 191 213 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03601 - - - csv:101209168 1432.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02807 Csa-Chr3:26882602 Csa06g03601 Csa-Chr6:29085557 7.76E-168 dispersed
Csa06g03601 Csa-Chr6:29085557 Csa07g02300 Csa-Chr7:21374921 3.49E-163 dispersed
Csa06g03601 Csa-Chr6:29085557 Csa07g00420 Csa-Chr7:3062611 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g00420 . 31 790 Strubbelig Receptor Gene Family AT4G03390 62.3 4.6e-208 721.5
Csa06g03601 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.4 1.0e-159 560.8
Csa07g02300 CCT 382 689 Strubbelig Receptor Gene Family AT4G03390 56.2 1.1e-89 328.2
Csa03g03592 . 17 736 Strubbelig Receptor Gene Family AT5G06820 53.3 7.0e-182 634.4
Csa03g03593 . 18 704 Strubbelig Receptor Gene Family AT5G06820 50.7 8.6e-164 574.3
Csa06g00324 . 22 697 Strubbelig Receptor Gene Family AT1G78980 60.6 1.7e-193 672.9
Csa03g02807 CCT 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Csa07g02300 CCT 24 692 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-125 446.4
Csa06g00324 . 20 674 Strubbelig Receptor Gene Family AT3G13065 51.2 5.1e-142 501.9
Csa01g03495 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.3e-84 311.2
Csa03g03592 . 17 736 Strubbelig Receptor Gene Family AT5G06820 53.3 7.0e-182 634.4
Csa03g03593 . 18 704 Strubbelig Receptor Gene Family AT5G06820 50.7 8.6e-164 574.3
Csa07g00420 . 31 790 Strubbelig Receptor Gene Family AT4G03390 62.3 4.6e-208 721.5
Csa06g03601 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.4 1.0e-159 560.8
Csa07g02300 CCT 382 689 Strubbelig Receptor Gene Family AT4G03390 56.2 1.1e-89 328.2
Csa06g00324 . 20 674 Strubbelig Receptor Gene Family AT3G13065 51.2 5.1e-142 501.9
Csa06g00324 . 22 697 Strubbelig Receptor Gene Family AT1G78980 60.6 1.7e-193 672.9
Csa03g02807 CCT 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Csa07g02300 CCT 24 692 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-125 446.4
Csa03g02807 CCT 1 719 Strubbelig Receptor Gene Family AT1G53730 59.7 1.0e-214 743.4
Csa07g02300 CCT 1 714 Strubbelig Receptor Gene Family AT1G53730 59.7 1.1e-184 643.7
Csa06g00324 . 15 682 Strubbelig Receptor Gene Family AT1G53730 52.0 4.0e-158 555.4
Csa03g02807 CCT 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 1.2e-188 656.8
Csa07g02300 CCT 6 704 Strubbelig Receptor Gene Family AT3G14350 56.0 5.7e-170 594.7
Csa04g00359 . 21 203 Strubbelig Receptor Gene Family AT3G14350 51.1 2.0e-42 171.0
Csa01g03495 . 138 712 Strubbelig Receptor Gene Family AT4G22130 61.3 1.5e-184 642.9
Csa03g02807 CCT 398 726 Strubbelig Receptor Gene Family AT4G22130 63.1 1.2e-120 430.6
Csa07g02300 CCT 391 706 Strubbelig Receptor Gene Family AT4G22130 64.2 5.1e-116 415.2
Csa07g00420 . 458 782 Strubbelig Receptor Gene Family AT4G22130 58.0 3.3e-107 386.0
Csa06g03601 . 464 752 Strubbelig Receptor Gene Family AT4G22130 60.8 5.1e-100 362.1
Csa06g00324 . 386 696 Strubbelig Receptor Gene Family AT4G22130 55.9 2.8e-98 356.3
Csa03g03592 . 387 702 Strubbelig Receptor Gene Family AT4G22130 50.6 9.4e-86 314.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78442 PF07714 PK_Tyr_Ser-Thr 1.70E-37 CL0016 Csa PK