Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03601 ATGGGTTGTGCTAATTGGAATTTGCTTATGAAGATCCTAATTGGGCTGCTCTTGGTTTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTTCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACATCTTTACAACTCAGTGGATTGAATTTAGGAGGAGAGCTAGGCACTAGCTTGGACCAATTCGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCCACACTGCCCCCTACACTGAGAAGTCTTTCTTTATCAGCCAATCAATTCACTGGAAGCATTCCCCCTGCACTGGCCTCGCTAGCACAACTAATGGACCTGTCACTAAATAACAACCTTCTTACCGGGGCAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACATGTCAAGCAACAACTTGAGTGGTCAGCTGCCTCCTTCGGTGGCTGATTTGTTATCCCTTACTACATTGCACTTGCAGAACAATCAACTTTCTGGGTTGCTTGACCCTCTACAGGATCTTCCGTTGTCAGACTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTCAATACTACAATAATTCCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACCACCAACTAGACAAGCAGGTGGAGGCCAGCCATTGTGGCCTGGGACTCCTGAATCATCAGATGGAGCAAGGAGCTTTTTCTCTGCTAAGCGAATCATTTGGATTGTTATTATTGGGACAGTAATATTAGTAGCATTAGGATTCTGTCTTCTTGTGTCAATATGCTTGAAAAGAAGCAAGCGTCGAAAAGACAACAAGATTGTTCGTGACAACACTGATATGGCTTCTAAATACAAGCCTAAACCCATGAAGCCCTCGGTTGAAGGTGTAGACATGGAGAAAGGTCCAAAGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAACAATGGATTTTACAACCCCAAGGCTACATGATAGACAGGACACAAATGGGAAAAGAAAAGATGCCTCTAATACAAGTTTCCGACGAGACCATACAGAGAGTTCGAGCATAAGCATGGATGACTTCCCTCCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATGGCGGCTGAAGTGCCCAGTAAAGTACCTAGAAAACTGAAAACAAGTTCTTTAAAAGTTTTCACAATCGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAGAGGCATGCTTGGTAGTGTCTATAGTGCTGAACTGCCAAGTGGAAGGCTTCTGGCTGTTAAGAAACTGGATGGATCCTCTTCAACTCATTGGAATGATGATGATTTTCACGACCTGGTGTCTAGTATATGTCAAATTCGGCATGATAACATTGTGGAGCTTGTGGGATATTGTGCTGAGCATGGACAATACCTACTCATTTACGAGTACTGCAAAAATGGCACACTCTATGATGCACTCCATGTTGACAAGGAGATGCATCAAAAGCTTTCATGGAATGTACGTGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTATCATGCACCAAAATTTCAAGTCTGCTAACATTCTCTTGGACAATGAGCTAAAACCACGAGTCTCTGACTCTGGCTTAGCTCGGCTGCTGCCTTCAGCTACTCAGTCATCTGCGCCATCCCTCCCAGCTCAGGGTTATAGTGCTCCTGAATTTGAGCTAGGAACTTACACTTACCAAAGTGATCTTTATAGCTTCGGAGTCGTAATGCTAGAGCTTTTGACTGGTCGAAAGTCTTGCGATCGATCACTGCCTCGAGGAGAACAATTTCTTGTTCGATGGGCTGTTCCAAGGCTCCATGATATCGATGCATTATCACGAATGGTCGATCCATCACTTAATGGCATGTATCCTGCTAAATCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGCATAATGAGAGAGCCTGAATTTCGGCCCCCGATCTCCGAAATTGTACAGGAACTCTTACAAATGCTGTAG 2259 44.18 MGCANWNLLMKILIGLLLVFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITSLQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPPTLRSLSLSANQFTGSIPPALASLAQLMDLSLNNNLLTGAIPDVFQLLNGLNNLDMSSNNLSGQLPPSVADLLSLTTLHLQNNQLSGLLDPLQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTVGPPTRQAGGGQPLWPGTPESSDGARSFFSAKRIIWIVIIGTVILVALGFCLLVSICLKRSKRRKDNKIVRDNTDMASKYKPKPMKPSVEGVDMEKGPKETTLKPLDRDRMKDRTMDFTTPRLHDRQDTNGKRKDASNTSFRRDHTESSSISMDDFPPPPPPPPFPLLSTQEIAKPMAAEVPSKVPRKLKTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYSAELPSGRLLAVKKLDGSSSTHWNDDDFHDLVSSICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKPRVSDSGLARLLPSATQSSAPSLPAQGYSAPEFELGTYTYQSDLYSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPAKSLSRFADIISSCIMREPEFRPPISEIVQELLQML* 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29085557 29090647 - CsaV3_6G049870.1 Csa06g03601 535228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03601 752 PANTHER LEUCINE RICH REPEAT KINASE 2 8 752 - -
Csa06g03601 752 Gene3D Ribonuclease Inhibitor 39 253 IPR032675 -
Csa06g03601 752 SUPERFAMILY Protein kinase-like (PK-like) 453 748 IPR011009 -
Csa06g03601 752 MobiDBLite consensus disorder prediction 421 436 - -
Csa06g03601 752 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Csa06g03601 752 MobiDBLite consensus disorder prediction 270 289 - -
Csa06g03601 752 MobiDBLite consensus disorder prediction 336 436 - -
Csa06g03601 752 Gene3D Transferase(Phosphotransferase) domain 1 554 752 - -
Csa06g03601 752 Pfam Protein tyrosine and serine/threonine kinase 480 748 IPR001245 GO:0004672|GO:0006468
Csa06g03601 752 MobiDBLite consensus disorder prediction 353 417 - -
Csa06g03601 752 SUPERFAMILY L domain-like 35 237 - -
Csa06g03601 752 Gene3D Phosphorylase Kinase; domain 1 439 553 - -
Csa06g03601 752 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 8 752 - -
Csa06g03601 752 ProSiteProfiles Protein kinase domain profile. 476 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03601 752 ProSiteProfiles Leucine-rich repeat profile. 191 213 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02807 Csa-Chr3:26882602 Csa06g03601 Csa-Chr6:29085557 7.76E-168 dispersed
Csa06g03601 Csa-Chr6:29085557 Csa07g02300 Csa-Chr7:21374921 3.49E-163 dispersed
Csa06g03601 Csa-Chr6:29085557 Csa07g00420 Csa-Chr7:3062611 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78442 PF07714 PK_Tyr_Ser-Thr 1.70E-37 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03601 - - csv:101209168 1432.54