Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03630 ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACGAAGTTTTCTCACACGGTTTATCATCGATGGGACTCATTAAAATTAAACCCAGTTCCTTTCATCGTCGAACCACCTCGCAATTCTGGCTTGAAATCGAGGCCTCCATCGGCTTCATCTGCTCAGAAGCCGAATCCTGATATTTCGAAGATTCAGCGAAGTTTCATTTCCAATAAACAGAGGTCTCTGTCTCCTCTCCCTGAGAGCAACCTCTCTGAAGTTTTCAAGGAAGCAAAATCCGAGAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAACGAACTAAGGAATTCAAGAACAAGCTATTCAATAAGGACCCTCAAGATTCAAAATCATCCAATTCCAAGTCATCGTTGAATACCAGTCCCTTGAAACAACTATCTTCAGGGAAAGGGGGTGATAAGTCAAAGTTGAAGAAGGACTCTTCCTGGACTAAATATTTCGATTCTGGAAAAGTCACTGCGGTTGAAACAGCGGATGACTGGACTGTTGATCTCTCCAAGTTGTTTGTTGGATTAAGGTTTGCTCATGGAGCTCATAGTCGACTTTATCATGGAAAGTACAACGACGAACCTGTTGCTGTTAAAATTATTAGAGTGCCTGATGATGACGAAAACGGAACGCTTGCGGCTCGATTGGAGAAGCAATTCACCAGAGAAGTTACCCTTTTATCGCGTCTCTATCATCCAAATGTTATAAAGTTTGTAGCTGCTTGTAGGAACCCACCTGTATACTGTGTCATTACTGAATATCTGTCTCAAGGATCATTAAGGGCATACTTACACAAACTTGAGCACCAATCCCTCCCTTTGCAAAAACTAATTAAATTTGCTTTAGATGTCGCTCGTGGCATGGAATACCTTCACTCACAAGGTGTAATTCATCGGGATCTTAAGCCTGAGAATGTTCTTATTGATGAAGACATGCACTTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGAGGCCTTTTTTGACCCATTAGCTGATGATCCCGGAACTTACCGATGGATGGCACCGGAGATGATCAAACACAAACCTTGTAGTCGAAAGGTTGACGTGTACAGCTTTGGGCTTATGTTATGGGAAATGGTATCTGGTGCAATTCCATACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGAATCTTAGGCCTGTTATCTCAAGTGATTGTCCATTAGCAATGCGAGCTTTAATCGAGCAATGTTGGTCGCTACAACCGGACAAGAGACCTGATTTCTGGCAGATTGTGAAGGTATTAGAGCAATTCGAATCTTCGCTTGCTCGTGATGGGACACTGAATTTATTAGGTAACCCTCTGTCTAGTTTCCATGACCATAAGAAAGGGCTCCTCCATTGGATTCAAAAGCTTGGCCCCCTACATCCCGAAGTTTCATCCTCGCCCGTGCCAAAACCAAAATTCTCATAA 1479 42.8 MDEEANSWLRRTKFSHTVYHRWDSLKLNPVPFIVEPPRNSGLKSRPPSASSAQKPNPDISKIQRSFISNKQRSLSPLPESNLSEVFKEAKSESKRFSTPTPRLRERTKEFKNKLFNKDPQDSKSSNSKSSLNTSPLKQLSSGKGGDKSKLKKDSSWTKYFDSGKVTAVETADDWTVDLSKLFVGLRFAHGAHSRLYHGKYNDEPVAVKIIRVPDDDENGTLAARLEKQFTREVTLLSRLYHPNVIKFVAACRNPPVYCVITEYLSQGSLRAYLHKLEHQSLPLQKLIKFALDVARGMEYLHSQGVIHRDLKPENVLIDEDMHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPCSRKVDVYSFGLMLWEMVSGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSLQPDKRPDFWQIVKVLEQFESSLARDGTLNLLGNPLSSFHDHKKGLLHWIQKLGPLHPEVSSSPVPKPKFS* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29264801 29268569 - CsaV3_6G050160.1 Csa06g03630 535257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03630 492 PRINTS Tyrosine kinase catalytic domain signature 261 274 IPR001245 GO:0004672|GO:0006468
Csa06g03630 492 PRINTS Tyrosine kinase catalytic domain signature 299 317 IPR001245 GO:0004672|GO:0006468
Csa06g03630 492 PRINTS Tyrosine kinase catalytic domain signature 345 355 IPR001245 GO:0004672|GO:0006468
Csa06g03630 492 PRINTS Tyrosine kinase catalytic domain signature 364 386 IPR001245 GO:0004672|GO:0006468
Csa06g03630 492 PRINTS Tyrosine kinase catalytic domain signature 408 430 IPR001245 GO:0004672|GO:0006468
Csa06g03630 492 MobiDBLite consensus disorder prediction 34 152 - -
Csa06g03630 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Csa06g03630 492 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 464 - -
Csa06g03630 492 MobiDBLite consensus disorder prediction 85 118 - -
Csa06g03630 492 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 464 - -
Csa06g03630 492 MobiDBLite consensus disorder prediction 119 141 - -
Csa06g03630 492 ProSiteProfiles Protein kinase domain profile. 181 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03630 492 Pfam Protein tyrosine and serine/threonine kinase 188 437 IPR001245 GO:0004672|GO:0006468
Csa06g03630 492 SMART serkin_6 181 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03630 492 MobiDBLite consensus disorder prediction 43 80 - -
Csa06g03630 492 CDD STKc_MAP3K-like 188 437 - -
Csa06g03630 492 SUPERFAMILY Protein kinase-like (PK-like) 166 437 IPR011009 -
Csa06g03630 492 Gene3D Phosphorylase Kinase; domain 1 169 265 - -
Csa06g03630 492 Gene3D Transferase(Phosphotransferase) domain 1 266 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00844 Csa-Chr1:5290383 Csa06g03630 Csa-Chr6:29264801 8.00E-116 dispersed
Csa02g00709 Csa-Chr2:5741381 Csa06g03630 Csa-Chr6:29264801 9.87E-98 dispersed
Csa06g03473 Csa-Chr6:28479047 Csa06g03630 Csa-Chr6:29264801 8.43E-111 dispersed
Csa06g03630 Csa-Chr6:29264801 Csa07g00131 Csa-Chr7:1153965 2.20E-74 dispersed
Csa03g03695 Csa-Chr3:32869564 Csa06g03630 Csa-Chr6:29264801 7.61E-40 transposed
Csa06g00537 Csa-Chr6:4558344 Csa06g03630 Csa-Chr6:29264801 8.24E-72 transposed
Csa01g01236 Csa-Chr1:7677514 Csa06g03630 Csa-Chr6:29264801 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78443 PF07714 PK_Tyr_Ser-Thr 2.60E-61 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03630 - - csv:101204268 923.309