Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03640 ATGGCTCGTAATCTCATATTCCTTCTCCTTCTCTTGTCCTTCATTTCCCTATCATTTTCAGATTCAATTCCATCTCCCGATTCCGAATGTGAAGCTCAGCTTCAACAAGACTGCCATGACAGAGCCGAGTCCCTCAAACTCAAGCTCATCTCCATTGCTACCATTTTAGTCGCGAGCATGATCGGCATTTCTCTTCCTCTCTTCTCCCGCGCCATACCAGTTCTTCATCCAGACGGACAAACCTTTGCAATCGTCAAGGCATTTGCCTCCGGTGTGATTCTAGCAACTGGTTATATGCACGTTCTCCCTGATTCCTACGATTTCTTAACATCCCCCTGTTTGCCAGAGAATCCATGGCGGAAATTCCCTTTCCCCACATTCATAGCAATGCTTTCCGCTATCATGACTCTAATGTTGGACTCGTTTTCGTTGAGTCACTTCAATAAACAGTCGATGCAGGATCAATTATCAGAAGAGGAGGAGGAGATCAATAATGAGGACCGCAAGGAAATGAGTGAAAATTTGGGGAAAGAAGAAGGAACCGGAGAAAAACTCGGGTCGCAATTGCTACGACACCGTGTTATCGCGCAAATACTAGAAGCTGGGATTGTAGTGCATTCGGTAGTGATAGGGCTTTCACTAGGGGCTTCGGAGAATCCGTGCACCATAAGACCGCTCATCGCTGCGCTGTGCTTTCATCAACTGTTTGAAGGGATGGGGCTTGGAGGGTGCATTCTGCAGGCGCAATACAGGATAAAGATGAAGGCGATAATGGTGTTTTTCTTCTCGGTTACGACGCCGTTTGGAATAGGATTGGGGATTGTGTTGTCGAACGTGTACAGTGAGAATAGTCCGACGGCGCTAATAGTAGTGGGGATTTTGAATGCTTTATCGGCAGGGTTGCTGAATTACATGGCGTTGGTTAATTTATTGGCGCATGATTTCAAGGGGCCAAAATTGCAAGCCAATCTCAAGCTGCATATATGGGCTTATGTTGCTGTTTTGATGGGAGTTGGAGGCATGTCTTTGTTGGCAACATGGGCTTAG 1047 46.51 MARNLIFLLLLLSFISLSFSDSIPSPDSECEAQLQQDCHDRAESLKLKLISIATILVASMIGISLPLFSRAIPVLHPDGQTFAIVKAFASGVILATGYMHVLPDSYDFLTSPCLPENPWRKFPFPTFIAMLSAIMTLMLDSFSLSHFNKQSMQDQLSEEEEEINNEDRKEMSENLGKEEGTGEKLGSQLLRHRVIAQILEAGIVVHSVVIGLSLGASENPCTIRPLIAALCFHQLFEGMGLGGCILQAQYRIKMKAIMVFFFSVTTPFGIGLGIVLSNVYSENSPTALIVVGILNALSAGLLNYMALVNLLAHDFKGPKLQANLKLHIWAYVAVLMGVGGMSLLATWA* 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29322423 29323912 - CsaV3_6G050260.1 Csa06g03640 535267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03640 348 MobiDBLite consensus disorder prediction 167 181 - -
Csa06g03640 348 Coils Coil 149 169 - -
Csa06g03640 348 PANTHER ZINC/IRON TRANSPORTER 27 348 - -
Csa06g03640 348 TIGRFAM zip: ZIP zinc/iron transport family 30 348 IPR004698 GO:0005385|GO:0016021|GO:0071577
Csa06g03640 348 MobiDBLite consensus disorder prediction 155 181 - -
Csa06g03640 348 Pfam ZIP Zinc transporter 46 345 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Csa06g03640 348 PANTHER ZINC TRANSPORTER 7 27 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03536 Csa-Chr1:32381584 Csa06g03640 Csa-Chr6:29322423 1.36E-78 dispersed
Csa02g01836 Csa-Chr2:17564303 Csa06g03640 Csa-Chr6:29322423 4.85E-31 dispersed
Csa06g01408 Csa-Chr6:12028908 Csa06g03640 Csa-Chr6:29322423 2.29E-73 dispersed
Csa06g03640 Csa-Chr6:29322423 Csa07g01214 Csa-Chr7:11924273 1.95E-103 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03640 K14709 - csv:101204028 638.262