Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03655 ATGGAAGCTGCTGCCTCCGACGGCGAGAATCACAACCTCAATAATGATAATATTAACAAAATTAGTAACTCCAGTGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCGTTTCAGCTTGAAACCCTCGAGAAAGCCTATGCTTTGGAGACTTACCCATCGGAGTCCACAAGGGCTGAACTTTCGGAGAAATTGGGCCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCACAGGAGGTTGAAGGACAAGAAAGAGCCGGCGAAGAAACCCAGAAAGGTGGTACCTGCTCCGGCGTTACCTGATTCTCCCATTGACGAATTGAGAGTAGTGGCTGAGCCGGGTAGTGATTATGCTTCAGGGTCGGGATCGGGTTCGAGTCCATTTGGTGATGTTGGGTTGCGTAATGCGGCACCTAGAAGTGTTGGAGATGATATGCCAATGATGAGAAGGTATTATGAAACTTCACGGTCTGTTATGGAACTTAGAGCTATTGCTTGTGTGGAGTCGCAGTTAGGTGAGCCATTGAGGGAGGACGGACCTATTCTTGGGATCGAATTTGATCCACTACCACCTGATGCTTTCGGAGCACCTATAGTAGCAGAACAGCAGAAGCGATCTGGACATTATGAACAACGGGATGCAAAATCAAATAAAGTGGCTGCAAGAGGATTCCCTGAATATCCCTTTATGCCGGACCAGGCTAATATTAGAGCTGATGCCTATGGTCCAGTTTCCCAATTACATTATTCAGATTCTTTAGGCGAGGTTTCAGCAGCCAGGACACCATCATTTTTGCATGGTCATGAACAGTTGAACAGGAGCCATAATTACCACAGTCAGGTCTCAAGGGTTCGTCACATGTCTCAACAGGAGAAGCAGGGAGTTACAATTTCATCTCCTGCTGAAGACAATGCATTTTCCCTTCCAAGGGATTCTTATCCAAATATCAGAATGAGTTCGCAGTTCACCGAACACCCAATTGTTGGACAAGAAAATTCTTATGTGTTGCCTGATGGGCATTTTCCAAACGATGCCATGATTAGGATGGAAAGGAAACGCAAGAGTGAAGAAGCTCGTTTGAGCAAAGAAGCTGAAGCCCACGAAATAAGAATGCGGAAAGAGCTTGAAAAACAAGATATTTTGAGGAAAAAGAATGAAGAACGAATGAGGAAAGAAATGGAAAAGCAAGATCGCGAAAGAAGAAGAGAGGAGGAGAGGTTACTGCGAGAAAAGCAGCGTGAAGCTGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGAAGGGAAAAGTTTCTGCAGAGGGAGTATTTGAGGGCTGAAAAGAGGAAACAAAAAGAAGCTATTCGCAAAGAGAAGGAAGCTGTGAGGCGCAAAGCTGCTATTGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCTATGGAGCTTATTGAGGACGAACAGCTTGAACTGATGGAACTGGCTGCCGCGAACAAAGGATTATCCTCCATATTAAATCTTGATCACGACACTTTGCAGAATCTTGAATCTTTCCGAGATTATCTTGGTGCATTTCCACCCAAGTCTGTGCAACTGAAGAAACCTTTCGGCATTCAGCCTTGGGTCAATTCAGAGGAGAACATTGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACGTTTTCTGATGTTCTAGAGCTGTGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCGAGATTGCTGGCTGAGATTCACATTTGCCTTTTGAGACTGATTGTAAAAGATATTGAAGATGTTGCAAGAACACCTTCTACTGGAATGGGAATGAACCAGAATGGTGTTGCCAATTCTGGAGGCGGACATCCGCAGATTGTTGAAGGGGCATATGCATGGGGGTTTGACATTTGCAATTGGCAGAAGCATTTAAACCCATTAACATGGCCAGAAATATTTAGACAATTAGCACTATCAGCTGGACATGGACCTCAGTTGAAAAAGAGGAGTTTGGCAATGTCTGAAATGCGTAGCAAAGATGAGGCTAAATGCGGTGAGGACGTAGTTTCTACTTTACGCAATGGTTCAGCCGCTGAAAATGCATTTGCTATCATGCAAGAAAAAGGTTTGTTAGCTCCTCGCAGATCTAGGCATCGGCTAACTCCTGGAACTGTCAAATTTGCTGCTTTTCATGTTCTTTCCCTAGAAGGCAGTGAGGGGCTAACAGTACTAGAGCTTGCAGAGAAGATACAGAGATCAGGACTTAGAGATCTGTCTACAAGCAAAACACCGGAGGCTTCCATTTCTGTTGCTTTGACAAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCCACATATCGCGTACGAGCCCCCTATAGGAAGGATCCAGATGATGCCGATGAGATACTTTCTGTAGCTAGAAAGAAAATTCAGGTATTCCAGAATGGGTTCTTGGCTGGAGAAGATGCCGATGATGTTGAAAGAGATGAAGAATCTGAATGTGATGATGTTGACGAAGATCCTGAAGTTGATGATATAGCGACGACTTCCTTGGTGAATGAAGATGTTAGCAAAGGAGATGTGAACTTGGAAGTTGAGAATGAGAACTTATGTCATGATATTGCTGGAAATCTACAAAATGATATTGCCAAAGATGTATTGCCATTCCCTCTAAGTGATTCTAAGGATGCAAAATATTTAAGCATGCCTACAGAGCAGTATGCTGCTGTTGATGACACTACTATCAGTGACCTTGATCAAGAAAATATGGAGATCGATGAAAGCAAGGAAGGTGAATCATGGATCCAAGGACTTACAGAAGGTGAATACCATGATCTTAGTGTTGAGGAGCGCTTGAATGCCCTTGTTGTCTTGACCAGTATTGCAAATGAAGGAAACTCTATTCGCCTTGTCCTTGAGGATCGCTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGACAGAGGCTCAGATTGATAAATCTCGCCTAAAAGAAGAGATCATTACTAAATCTGATTTTCCAATTCATATAGTAAGCAAGGTGGAAATTGAACTCAACGGTTCCACTATGGATGGTGGGCAAAGCCCTTTTCCTGTCGCTGACAATAAGAACAATGAAACAACCCCAAGCACTGCAGAAAACCACAGTAGTGTGCCTAATGAGAGGGGTACTTTAGTGCCAGATCTTTTCCCAGGTCCAGATAACTTCTTGGCTCAGCAATGTGGACATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCATAGAGCTGAAGAAATGTACACATACAGATCTTTGCCTCTTGGTCGAGATCGTAGGCGTAATCGGTATTGGCAATTTGTTGCATCTTCTTCAAGCAATGATCCTGGTTCTGGGAGAATCTTTGTTGAAATGTACGATGGAAACTGGAGGCTTATTGATTCTGAAGAGGGTTTTGATGCTCTTTCATTGGCTTTGGACACACGTGGGATTAGAGAATCACACTTACGCATAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTAGGAGGAATCTGCAGTGTGCCAATGAGATGGTTCAAAGTGGAATTACTCCTAAAAATGAAAATGATTATTCAAGCTCTAGTCCTGATTGCACTGCTGGTTTTAACAGTCCTAGCAGTACTGTTTGCGGATTAAATTTGGATACAATGGTAACATCATCTTCATTCAGAATTGAGCTTGGGAGAAATGAAAACGAAAAGAAGAATGCATTTAGACGGTATCAAGACTTGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCACATCTACGCTATGTGCCATGAAATTTGGAGAAAAAAGATGCAATTCACTGTTTGACATTTGTGATTCTTGTCTGTGCTTGTTTGATTCTCAACATTCTCACTGTCCTTCGTGCCATCAAACTTTTGGTGTTGGTGGGAATGATATTAATTTTCTAGAACACACACGTCACTGTGAGAGGGAAAGGAAGTCTAGCCCTTTGGATACACACTTTTTAGATGCATCTCTTCCCCTCAAAAGTAGGTTGCTCAAGGCTTTCCTAGCTTTCATTGAGGTACATGTTCCGTCGGAAGCTTTTCAATCATTTTGGACAGAACATAGGCAAGAGTGGGGTGTCAGGATGAAACTATCTTCTTCTATTGAGGAGCTTCTACAGTTATTGACCATGTTTGAAAGTGTAATTAAGCGAGACTTTCTAAAATCAGACTTCACTACAACTGACGAGCACCTAAGTTCATGTTCTATCTCTGGGAATGTTATACATGATCCCGCAGATATTGGATCGGTAATTACATTACCGTGGATTCCACGGACTAGTGCAGCTGTTGGTTTAAGGCTTTGTGAGGTAGATGCATCAATTTATTATATTGGATGTGAGAAACCAGAGCCTGACCAGGACAAGGAACTCGGAGAACATATAAACTTTTCCAGTAGATATGTCCAGGTTAAGAATGATGAGCGGACTAAACTAAATGGCTTGGATTATGATGATCTGATGAAGAACGAAAACTCAGCCGATCCAAAAAGTTTAAGGAACAGCTATAAACGCGGTAGAGGAAGTAGAGATTTTGGACGTCGTAGGAAGTGGCAGAAAAAAGTTAATGGATCCAGATCTGGCCGGGTCCGGCAAAATGTCAAGAGTAACGAGAAGATTAATCAAGGACAGGGAGAGCTGGGACAAGGAACTCAGCTTATGGGCATACGCGGCCGCCGTACAGTAAGGAAAAGGAGGGCTGAGAAGAGCATTCCAGATGAAGGATTGTCAGGGCTAGTGCCTAGTAGTAGCACTCAGAACATAGATGAATCCCCAAAAGATTATCTTGGGGAATGGGAGGATGAAAAAATGGATAGATTTGTCGATATGGAAGACGAAGAGAATGTGATGGAAGATGAAGAGAATATGATGGAAGATGAGGAAAATGAGGAGAATGAAGAGAATGTAAACAACGTAGAACAGATGGACTCCGACGATGGCCAGGAAGTTGGATATGAGCAAGGGGGCTGGGAGTTTGGGTTTGAAGGGACTTCCAACAGATGGAATGGTGATTTAGGGATAGGTAGTGATGAGGATGTGGATTTATCTGACTACAATGGCACTGAAGAGGGAGGAAATGATGATATAGAGGAATTAGATGTTGATAGCAGCGAGGAGTCGGATTGTTCACCAAATAGGATAGGCAACAATGGTGGAGGAGAATCCGCTGTTTCAGACGACTATAGTGACTAA 5250 42.99 MEAAASDGENHNLNNDNINKISNSSEGLSKPKRQMKTPFQLETLEKAYALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRKVVPAPALPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNAAPRSVGDDMPMMRRYYETSRSVMELRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIVAEQQKRSGHYEQRDAKSNKVAARGFPEYPFMPDQANIRADAYGPVSQLHYSDSLGEVSAARTPSFLHGHEQLNRSHNYHSQVSRVRHMSQQEKQGVTISSPAEDNAFSLPRDSYPNIRMSSQFTEHPIVGQENSYVLPDGHFPNDAMIRMERKRKSEEARLSKEAEAHEIRMRKELEKQDILRKKNEERMRKEMEKQDRERRREEERLLREKQREAERLKREERREHERREKFLQREYLRAEKRKQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLSSILNLDHDTLQNLESFRDYLGAFPPKSVQLKKPFGIQPWVNSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLAEIHICLLRLIVKDIEDVARTPSTGMGMNQNGVANSGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGHGPQLKKRSLAMSEMRSKDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDADEILSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDIATTSLVNEDVSKGDVNLEVENENLCHDIAGNLQNDIAKDVLPFPLSDSKDAKYLSMPTEQYAAVDDTTISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALVVLTSIANEGNSIRLVLEDRLEAANAVKKQMLTEAQIDKSRLKEEIITKSDFPIHIVSKVEIELNGSTMDGGQSPFPVADNKNNETTPSTAENHSSVPNERGTLVPDLFPGPDNFLAQQCGHASKRSRSQLKSYIAHRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGNWRLIDSEEGFDALSLALDTRGIRESHLRIMLQMIETSFKENVRRNLQCANEMVQSGITPKNENDYSSSSPDCTAGFNSPSSTVCGLNLDTMVTSSSFRIELGRNENEKKNAFRRYQDLQRWMLRECFSTSTLCAMKFGEKRCNSLFDICDSCLCLFDSQHSHCPSCHQTFGVGGNDINFLEHTRHCERERKSSPLDTHFLDASLPLKSRLLKAFLAFIEVHVPSEAFQSFWTEHRQEWGVRMKLSSSIEELLQLLTMFESVIKRDFLKSDFTTTDEHLSSCSISGNVIHDPADIGSVITLPWIPRTSAAVGLRLCEVDASIYYIGCEKPEPDQDKELGEHINFSSRYVQVKNDERTKLNGLDYDDLMKNENSADPKSLRNSYKRGRGSRDFGRRRKWQKKVNGSRSGRVRQNVKSNEKINQGQGELGQGTQLMGIRGRRTVRKRRAEKSIPDEGLSGLVPSSSTQNIDESPKDYLGEWEDEKMDRFVDMEDEENVMEDEENMMEDEENEENEENVNNVEQMDSDDGQEVGYEQGGWEFGFEGTSNRWNGDLGIGSDEDVDLSDYNGTEEGGNDDIEELDVDSSEESDCSPNRIGNNGGGESAVSDDYSD* 1750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29383927 29395278 - CsaV3_6G050410.1 Csa06g03655 535282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03655 1749 ProSiteProfiles DDT domain profile. 541 600 IPR018501 -
Csa06g03655 1749 SMART testlast3 541 600 IPR018501 -
Csa06g03655 1749 SMART HOX_1 29 91 IPR001356 GO:0003677
Csa06g03655 1749 MobiDBLite consensus disorder prediction 1505 1611 - -
Csa06g03655 1749 MobiDBLite consensus disorder prediction 1544 1568 - -
Csa06g03655 1749 SUPERFAMILY Homeodomain-like 21 87 IPR009057 -
Csa06g03655 1749 MobiDBLite consensus disorder prediction 1701 1724 - -
Csa06g03655 1749 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1102 1172 IPR028941 -
Csa06g03655 1749 MobiDBLite consensus disorder prediction 1505 1527 - -
Csa06g03655 1749 Coils Coil 383 461 - -
Csa06g03655 1749 MobiDBLite consensus disorder prediction 1023 1056 - -
Csa06g03655 1749 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 931 971 IPR028942 -
Csa06g03655 1749 MobiDBLite consensus disorder prediction 8 31 - -
Csa06g03655 1749 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 1749 IPR044977 GO:0006357
Csa06g03655 1749 MobiDBLite consensus disorder prediction 1637 1749 - -
Csa06g03655 1749 Coils Coil 1629 1661 - -
Csa06g03655 1749 MobiDBLite consensus disorder prediction 385 408 - -
Csa06g03655 1749 MobiDBLite consensus disorder prediction 1 40 - -
Csa06g03655 1749 Pfam Homeodomain 30 86 IPR001356 GO:0003677
Csa06g03655 1749 MobiDBLite consensus disorder prediction 116 144 - -
Csa06g03655 1749 MobiDBLite consensus disorder prediction 1727 1749 - -
Csa06g03655 1749 MobiDBLite consensus disorder prediction 1596 1610 - -
Csa06g03655 1749 MobiDBLite consensus disorder prediction 1637 1659 - -
Csa06g03655 1749 Pfam DDT domain 542 597 IPR018501 -
Csa06g03655 1749 Pfam HB1, ASXL, restriction endonuclease HTH domain 723 791 IPR007759 GO:0006355
Csa06g03655 1749 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Csa06g03655 1749 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 4 1749 - -
Csa06g03655 1749 CDD homeodomain 32 87 IPR001356 GO:0003677
Csa06g03655 1749 MobiDBLite consensus disorder prediction 1528 1543 - -
Csa06g03655 1749 ProSiteProfiles HARE-type HTH domain profile. 723 792 IPR007759 GO:0006355
Csa06g03655 1749 Gene3D - 21 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01665 Csa-Chr2:15798125 Csa06g03655 Csa-Chr6:29383927 1.75E-09 dispersed
Csa06g02518 Csa-Chr6:22397053 Csa06g03655 Csa-Chr6:29383927 7.52E-07 dispersed
Csa06g03655 Csa-Chr6:29383927 Csa07g01279 Csa-Chr7:12720761 2.35E-32 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32197 PF15613 WSD 4.20E-13 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03655 - - csv:101220962 3218.33