Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03655 | ATGGAAGCTGCTGCCTCCGACGGCGAGAATCACAACCTCAATAATGATAATATTAACAAAATTAGTAACTCCAGTGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCGTTTCAGCTTGAAACCCTCGAGAAAGCCTATGCTTTGGAGACTTACCCATCGGAGTCCACAAGGGCTGAACTTTCGGAGAAATTGGGCCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCACAGGAGGTTGAAGGACAAGAAAGAGCCGGCGAAGAAACCCAGAAAGGTGGTACCTGCTCCGGCGTTACCTGATTCTCCCATTGACGAATTGAGAGTAGTGGCTGAGCCGGGTAGTGATTATGCTTCAGGGTCGGGATCGGGTTCGAGTCCATTTGGTGATGTTGGGTTGCGTAATGCGGCACCTAGAAGTGTTGGAGATGATATGCCAATGATGAGAAGGTATTATGAAACTTCACGGTCTGTTATGGAACTTAGAGCTATTGCTTGTGTGGAGTCGCAGTTAGGTGAGCCATTGAGGGAGGACGGACCTATTCTTGGGATCGAATTTGATCCACTACCACCTGATGCTTTCGGAGCACCTATAGTAGCAGAACAGCAGAAGCGATCTGGACATTATGAACAACGGGATGCAAAATCAAATAAAGTGGCTGCAAGAGGATTCCCTGAATATCCCTTTATGCCGGACCAGGCTAATATTAGAGCTGATGCCTATGGTCCAGTTTCCCAATTACATTATTCAGATTCTTTAGGCGAGGTTTCAGCAGCCAGGACACCATCATTTTTGCATGGTCATGAACAGTTGAACAGGAGCCATAATTACCACAGTCAGGTCTCAAGGGTTCGTCACATGTCTCAACAGGAGAAGCAGGGAGTTACAATTTCATCTCCTGCTGAAGACAATGCATTTTCCCTTCCAAGGGATTCTTATCCAAATATCAGAATGAGTTCGCAGTTCACCGAACACCCAATTGTTGGACAAGAAAATTCTTATGTGTTGCCTGATGGGCATTTTCCAAACGATGCCATGATTAGGATGGAAAGGAAACGCAAGAGTGAAGAAGCTCGTTTGAGCAAAGAAGCTGAAGCCCACGAAATAAGAATGCGGAAAGAGCTTGAAAAACAAGATATTTTGAGGAAAAAGAATGAAGAACGAATGAGGAAAGAAATGGAAAAGCAAGATCGCGAAAGAAGAAGAGAGGAGGAGAGGTTACTGCGAGAAAAGCAGCGTGAAGCTGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGAAGGGAAAAGTTTCTGCAGAGGGAGTATTTGAGGGCTGAAAAGAGGAAACAAAAAGAAGCTATTCGCAAAGAGAAGGAAGCTGTGAGGCGCAAAGCTGCTATTGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCTATGGAGCTTATTGAGGACGAACAGCTTGAACTGATGGAACTGGCTGCCGCGAACAAAGGATTATCCTCCATATTAAATCTTGATCACGACACTTTGCAGAATCTTGAATCTTTCCGAGATTATCTTGGTGCATTTCCACCCAAGTCTGTGCAACTGAAGAAACCTTTCGGCATTCAGCCTTGGGTCAATTCAGAGGAGAACATTGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACGTTTTCTGATGTTCTAGAGCTGTGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCGAGATTGCTGGCTGAGATTCACATTTGCCTTTTGAGACTGATTGTAAAAGATATTGAAGATGTTGCAAGAACACCTTCTACTGGAATGGGAATGAACCAGAATGGTGTTGCCAATTCTGGAGGCGGACATCCGCAGATTGTTGAAGGGGCATATGCATGGGGGTTTGACATTTGCAATTGGCAGAAGCATTTAAACCCATTAACATGGCCAGAAATATTTAGACAATTAGCACTATCAGCTGGACATGGACCTCAGTTGAAAAAGAGGAGTTTGGCAATGTCTGAAATGCGTAGCAAAGATGAGGCTAAATGCGGTGAGGACGTAGTTTCTACTTTACGCAATGGTTCAGCCGCTGAAAATGCATTTGCTATCATGCAAGAAAAAGGTTTGTTAGCTCCTCGCAGATCTAGGCATCGGCTAACTCCTGGAACTGTCAAATTTGCTGCTTTTCATGTTCTTTCCCTAGAAGGCAGTGAGGGGCTAACAGTACTAGAGCTTGCAGAGAAGATACAGAGATCAGGACTTAGAGATCTGTCTACAAGCAAAACACCGGAGGCTTCCATTTCTGTTGCTTTGACAAGGGATACTAAGCTTTTTGAAAGAATAGCTCCTTCCACATATCGCGTACGAGCCCCCTATAGGAAGGATCCAGATGATGCCGATGAGATACTTTCTGTAGCTAGAAAGAAAATTCAGGTATTCCAGAATGGGTTCTTGGCTGGAGAAGATGCCGATGATGTTGAAAGAGATGAAGAATCTGAATGTGATGATGTTGACGAAGATCCTGAAGTTGATGATATAGCGACGACTTCCTTGGTGAATGAAGATGTTAGCAAAGGAGATGTGAACTTGGAAGTTGAGAATGAGAACTTATGTCATGATATTGCTGGAAATCTACAAAATGATATTGCCAAAGATGTATTGCCATTCCCTCTAAGTGATTCTAAGGATGCAAAATATTTAAGCATGCCTACAGAGCAGTATGCTGCTGTTGATGACACTACTATCAGTGACCTTGATCAAGAAAATATGGAGATCGATGAAAGCAAGGAAGGTGAATCATGGATCCAAGGACTTACAGAAGGTGAATACCATGATCTTAGTGTTGAGGAGCGCTTGAATGCCCTTGTTGTCTTGACCAGTATTGCAAATGAAGGAAACTCTATTCGCCTTGTCCTTGAGGATCGCTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGACAGAGGCTCAGATTGATAAATCTCGCCTAAAAGAAGAGATCATTACTAAATCTGATTTTCCAATTCATATAGTAAGCAAGGTGGAAATTGAACTCAACGGTTCCACTATGGATGGTGGGCAAAGCCCTTTTCCTGTCGCTGACAATAAGAACAATGAAACAACCCCAAGCACTGCAGAAAACCACAGTAGTGTGCCTAATGAGAGGGGTACTTTAGTGCCAGATCTTTTCCCAGGTCCAGATAACTTCTTGGCTCAGCAATGTGGACATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCATAGAGCTGAAGAAATGTACACATACAGATCTTTGCCTCTTGGTCGAGATCGTAGGCGTAATCGGTATTGGCAATTTGTTGCATCTTCTTCAAGCAATGATCCTGGTTCTGGGAGAATCTTTGTTGAAATGTACGATGGAAACTGGAGGCTTATTGATTCTGAAGAGGGTTTTGATGCTCTTTCATTGGCTTTGGACACACGTGGGATTAGAGAATCACACTTACGCATAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTAGGAGGAATCTGCAGTGTGCCAATGAGATGGTTCAAAGTGGAATTACTCCTAAAAATGAAAATGATTATTCAAGCTCTAGTCCTGATTGCACTGCTGGTTTTAACAGTCCTAGCAGTACTGTTTGCGGATTAAATTTGGATACAATGGTAACATCATCTTCATTCAGAATTGAGCTTGGGAGAAATGAAAACGAAAAGAAGAATGCATTTAGACGGTATCAAGACTTGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCACATCTACGCTATGTGCCATGAAATTTGGAGAAAAAAGATGCAATTCACTGTTTGACATTTGTGATTCTTGTCTGTGCTTGTTTGATTCTCAACATTCTCACTGTCCTTCGTGCCATCAAACTTTTGGTGTTGGTGGGAATGATATTAATTTTCTAGAACACACACGTCACTGTGAGAGGGAAAGGAAGTCTAGCCCTTTGGATACACACTTTTTAGATGCATCTCTTCCCCTCAAAAGTAGGTTGCTCAAGGCTTTCCTAGCTTTCATTGAGGTACATGTTCCGTCGGAAGCTTTTCAATCATTTTGGACAGAACATAGGCAAGAGTGGGGTGTCAGGATGAAACTATCTTCTTCTATTGAGGAGCTTCTACAGTTATTGACCATGTTTGAAAGTGTAATTAAGCGAGACTTTCTAAAATCAGACTTCACTACAACTGACGAGCACCTAAGTTCATGTTCTATCTCTGGGAATGTTATACATGATCCCGCAGATATTGGATCGGTAATTACATTACCGTGGATTCCACGGACTAGTGCAGCTGTTGGTTTAAGGCTTTGTGAGGTAGATGCATCAATTTATTATATTGGATGTGAGAAACCAGAGCCTGACCAGGACAAGGAACTCGGAGAACATATAAACTTTTCCAGTAGATATGTCCAGGTTAAGAATGATGAGCGGACTAAACTAAATGGCTTGGATTATGATGATCTGATGAAGAACGAAAACTCAGCCGATCCAAAAAGTTTAAGGAACAGCTATAAACGCGGTAGAGGAAGTAGAGATTTTGGACGTCGTAGGAAGTGGCAGAAAAAAGTTAATGGATCCAGATCTGGCCGGGTCCGGCAAAATGTCAAGAGTAACGAGAAGATTAATCAAGGACAGGGAGAGCTGGGACAAGGAACTCAGCTTATGGGCATACGCGGCCGCCGTACAGTAAGGAAAAGGAGGGCTGAGAAGAGCATTCCAGATGAAGGATTGTCAGGGCTAGTGCCTAGTAGTAGCACTCAGAACATAGATGAATCCCCAAAAGATTATCTTGGGGAATGGGAGGATGAAAAAATGGATAGATTTGTCGATATGGAAGACGAAGAGAATGTGATGGAAGATGAAGAGAATATGATGGAAGATGAGGAAAATGAGGAGAATGAAGAGAATGTAAACAACGTAGAACAGATGGACTCCGACGATGGCCAGGAAGTTGGATATGAGCAAGGGGGCTGGGAGTTTGGGTTTGAAGGGACTTCCAACAGATGGAATGGTGATTTAGGGATAGGTAGTGATGAGGATGTGGATTTATCTGACTACAATGGCACTGAAGAGGGAGGAAATGATGATATAGAGGAATTAGATGTTGATAGCAGCGAGGAGTCGGATTGTTCACCAAATAGGATAGGCAACAATGGTGGAGGAGAATCCGCTGTTTCAGACGACTATAGTGACTAA | 5250 | 42.99 | MEAAASDGENHNLNNDNINKISNSSEGLSKPKRQMKTPFQLETLEKAYALETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPAKKPRKVVPAPALPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNAAPRSVGDDMPMMRRYYETSRSVMELRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIVAEQQKRSGHYEQRDAKSNKVAARGFPEYPFMPDQANIRADAYGPVSQLHYSDSLGEVSAARTPSFLHGHEQLNRSHNYHSQVSRVRHMSQQEKQGVTISSPAEDNAFSLPRDSYPNIRMSSQFTEHPIVGQENSYVLPDGHFPNDAMIRMERKRKSEEARLSKEAEAHEIRMRKELEKQDILRKKNEERMRKEMEKQDRERRREEERLLREKQREAERLKREERREHERREKFLQREYLRAEKRKQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLSSILNLDHDTLQNLESFRDYLGAFPPKSVQLKKPFGIQPWVNSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLAEIHICLLRLIVKDIEDVARTPSTGMGMNQNGVANSGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGHGPQLKKRSLAMSEMRSKDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDADEILSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDIATTSLVNEDVSKGDVNLEVENENLCHDIAGNLQNDIAKDVLPFPLSDSKDAKYLSMPTEQYAAVDDTTISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALVVLTSIANEGNSIRLVLEDRLEAANAVKKQMLTEAQIDKSRLKEEIITKSDFPIHIVSKVEIELNGSTMDGGQSPFPVADNKNNETTPSTAENHSSVPNERGTLVPDLFPGPDNFLAQQCGHASKRSRSQLKSYIAHRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGNWRLIDSEEGFDALSLALDTRGIRESHLRIMLQMIETSFKENVRRNLQCANEMVQSGITPKNENDYSSSSPDCTAGFNSPSSTVCGLNLDTMVTSSSFRIELGRNENEKKNAFRRYQDLQRWMLRECFSTSTLCAMKFGEKRCNSLFDICDSCLCLFDSQHSHCPSCHQTFGVGGNDINFLEHTRHCERERKSSPLDTHFLDASLPLKSRLLKAFLAFIEVHVPSEAFQSFWTEHRQEWGVRMKLSSSIEELLQLLTMFESVIKRDFLKSDFTTTDEHLSSCSISGNVIHDPADIGSVITLPWIPRTSAAVGLRLCEVDASIYYIGCEKPEPDQDKELGEHINFSSRYVQVKNDERTKLNGLDYDDLMKNENSADPKSLRNSYKRGRGSRDFGRRRKWQKKVNGSRSGRVRQNVKSNEKINQGQGELGQGTQLMGIRGRRTVRKRRAEKSIPDEGLSGLVPSSSTQNIDESPKDYLGEWEDEKMDRFVDMEDEENVMEDEENMMEDEENEENEENVNNVEQMDSDDGQEVGYEQGGWEFGFEGTSNRWNGDLGIGSDEDVDLSDYNGTEEGGNDDIEELDVDSSEESDCSPNRIGNNGGGESAVSDDYSD* | 1750 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 29383927 | 29395278 | - | CsaV3_6G050410.1 | Csa06g03655 | 535282 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03655 | 1749 | ProSiteProfiles | DDT domain profile. | 541 | 600 | IPR018501 | - | |
Csa06g03655 | 1749 | SMART | testlast3 | 541 | 600 | IPR018501 | - | |
Csa06g03655 | 1749 | SMART | HOX_1 | 29 | 91 | IPR001356 | GO:0003677 | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 1505 | 1611 | - | - | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 1544 | 1568 | - | - | |
Csa06g03655 | 1749 | SUPERFAMILY | Homeodomain-like | 21 | 87 | IPR009057 | - | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 1701 | 1724 | - | - | |
Csa06g03655 | 1749 | Pfam | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | 1102 | 1172 | IPR028941 | - | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 1505 | 1527 | - | - | |
Csa06g03655 | 1749 | Coils | Coil | 383 | 461 | - | - | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 1023 | 1056 | - | - | |
Csa06g03655 | 1749 | Pfam | WSTF, HB1, Itc1p, MBD9 motif 1 | 931 | 971 | IPR028942 | - | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 8 | 31 | - | - | |
Csa06g03655 | 1749 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT2 | 4 | 1749 | IPR044977 | GO:0006357 | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 1637 | 1749 | - | - | |
Csa06g03655 | 1749 | Coils | Coil | 1629 | 1661 | - | - | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 385 | 408 | - | - | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Csa06g03655 | 1749 | Pfam | Homeodomain | 30 | 86 | IPR001356 | GO:0003677 | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 116 | 144 | - | - | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 1727 | 1749 | - | - | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 1596 | 1610 | - | - | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 1637 | 1659 | - | - | |
Csa06g03655 | 1749 | Pfam | DDT domain | 542 | 597 | IPR018501 | - | |
Csa06g03655 | 1749 | Pfam | HB1, ASXL, restriction endonuclease HTH domain | 723 | 791 | IPR007759 | GO:0006355 | |
Csa06g03655 | 1749 | ProSiteProfiles | 'Homeobox' domain profile. | 27 | 87 | IPR001356 | GO:0003677 | |
Csa06g03655 | 1749 | PANTHER | HOMEOBOX-DDT DOMAIN PROTEIN RLT1 | 4 | 1749 | - | - | |
Csa06g03655 | 1749 | CDD | homeodomain | 32 | 87 | IPR001356 | GO:0003677 | |
Csa06g03655 | 1749 | MobiDBLite | consensus disorder prediction | 1528 | 1543 | - | - | |
Csa06g03655 | 1749 | ProSiteProfiles | HARE-type HTH domain profile. | 723 | 792 | IPR007759 | GO:0006355 | |
Csa06g03655 | 1749 | Gene3D | - | 21 | 96 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01665 | Csa-Chr2:15798125 | Csa06g03655 | Csa-Chr6:29383927 | 1.75E-09 | dispersed | |
Csa06g02518 | Csa-Chr6:22397053 | Csa06g03655 | Csa-Chr6:29383927 | 7.52E-07 | dispersed | |
Csa06g03655 | Csa-Chr6:29383927 | Csa07g01279 | Csa-Chr7:12720761 | 2.35E-32 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32197 | PF15613 | WSD | 4.20E-13 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03655 | - | - | csv:101220962 | 3218.33 |