Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03657 ATGCCTTTCTGTTCATTCCTTTTCCTCCTCTGTTTTCCTCTGTTTTCCTTCGCCCTCAATCAAGAGGGTCATATTCTTCAGGCCTTTAAGCGCTCTATAGAGGATCGTGGCAATGCCTTCTCTTCCTGGAATGCAACTGACCCTGATCCCTGTTTATGGAATGGTGTCACATGTGACGAACATCGTCAAGTCATTTCCCTTGAGCTCATCAGCTCTGCTATTTCTTCAACTTTCCCTCTTCAACTCTGTAAGCTTCCACATCTTCTTTACCTTTCTCTTTACAATAATACCTTTCATTCCATTCTCCCTCCTGCCATTTCCAACTGTACTACTCTTGAGTTTCTTGACCTTGGCCAAAATCTCCTCACCGGTTCTATCCCTTCCTCAATTGCTGATTTGCGTCATCTTCGTTACTTGGATTTGTCCGGCAACAATTTCTCCGGCCGAATACCTCCCTCTTTCGGTCAGTTTCCGCAACTAGAGGCGTTTTCGCTTATTTCGAATCTTGTGGGTGGTACCGTTCCTCCGTTTCTTGGGAACATTACTTCTCTTAAGATGATGAATTTGTCTTACAACTCTTTTGACCCTGGGAGAATCCCTCCGGAGTTAGGTAATCTGATGAATCTTGAGGTTCTTTGGTTGACGGGTTGTAAATTACAAGGGGAAATTCCTGACTCGTTTAGAGGGCTCAAGAACCTCATTCTTCTGGATTTGAGCAGTAACAATCTTACTGGGGTGTTCCCGAAAGCGCTGACGGAGTTAACCCATGTGACACAGATTGAGTTGTTTGGCAATTATATGTCCGGCGCGTTACCAGATACGTTTTCGAAACTCAAGGCGTTGCGCATGTTCGACGTCTCAATGAATAATTTTTCTGGGCCAATTCCGAGTAGCTTGTTTGAGTTGCCGCTTGAAAGCCTTAATGCGTTTGAGAATAATTTCGAGGGTAGCTTGCCGGAAAGCATGGCGAAGTCGAGGTCCTTGAAAGAGATTAAGTTATTTGCGAACAAATTCACGGGGGCGTTACCAGTGGATTTGGGAAAATATTCGGCTCTGGCATCGTTGGACATTTCGAACAACTTCTTTTCCGGCAGCATTCCGGAGAACTTATGTGCAAAGGGGGCATTGACGGAGATAATGATGATCAACAACCTTTTTTCCGGCGAACTCCCATCAAGTCTCGGCAATTGCCAGAGTCTGACCAGGATCCGATTAGGGAACAACAATTTTACTGGTCCTGTACCAGAAAATATATGGGGACTTCCAGATGTTTCTCTTCTTGAACTTACAAACAACACCTTCTCGGGCAAAATCTCAAAGAAAATAGGCAATTCCAAGATGTTGAGTATGATTCTTATTTCTAGGAACAATTTCTCAGGAACAATTCCAAGGGAGATTGGTTCTTTGAAGAATCTGGTCGAGTTTTCTGCTGACCATAACAAATTAATCGGAAATATCCCTGACAGCATTATGAAATTGAATCGGCTAGCTAAGTTAGATCTTCGAAACAACAAGCTTTCCGGGTTGCTCGACCACAGGCTTTATGCCTGGGAGAGGTTGAATGAGCTCAATTTGGCCAATAATAACTTCTCTGGGAAAATTCCCCCGGCAATTGCTTTCTTGCCAGTACTTAATTACCTTGATCTTTCAGGCAATCAGTTTTCTGGAGAAATCCCACATGGGTTACAGAATGTGAACCTCAATGTTCTGAATCTATCATACAACCACTTAACTGGAATACTTCCTTCCTATTTTGAGAGATCAATGTACAAAAATAGCTTTCTGGGCAATCCTGGATTGTGTAAGGGAGAAAATGATGCGTGTCATCTAATTCATTCTTCAAAAAGTGGAGGAAGAGGTGGAGAAGAAAAAGAATGTGATGAGGAAGGAGGTTGCCTTTGGCTGCAGCGATCTATCTTTGTATTTGTAGGTGTAACTCTCTTTGTGGGAGCGGTTTTGTTCCATGTCAAGTACAAGACATTCGTCAAGACAAGAAGTTTAAACATCAAATCAAAATGGATAATGACATCGTTCCAAAAGCTTTCTTTTGACTATGACGACATTGTGGATTCTCTAGATGAAGACAATGTGATAGGCAGTGGAGGCTCTTGCTTAGTTTACAAGATCGTTCTCGCCAATGGCGAGACCATTGCGGTTAAGAAACTTTGGCCCGAGCTGCCTGATGATTGCAAGAGCATCGATCTCGAGAATAATTGCACTGAAGTTAATGCTTTTGATGCAGAAGTAATGACTTTGGGTGAAATAAGGCATAAAAACATAGTGAAACTTTTGTGTTGTTGTACTAATGGAGAATGCAACCTTTTGGTCTATGAATATATGCCTAATGGGAGCTTAGGTGATATGCTTCATGGCATTAAAAAAGAGTTATTGGATTGGCAAACAAGATACAAGATAGCCTTGGATGCTGCTGAGGGGCTTTCTTATCTTCATCACGATTGTGTTCCTCCAATTATACACAGAGATGTCAAGTCCAATAACATCTTGTTGGATGCCGAATTTGGAGCCAAGATAGCAGATTTTGGAATAGCTATGACCGTTGATATATCAAAGGTTAAAACCATGTCGGTCATTGCTGGTTCTTGTGGTTATATTGCCCCAGAGTATGCCTATACATTGAATGTAAACGAGAAGAGCGATATCTTCAGCTATGGTATGGTAATCCTTGAATTGATAACAGGGAGGCGGCCAACCGACCTCGAATGCGAAGAAAATGATCTTGTCAAATGGGTAAGAACCACTTTAGAAGGGAAAGGCCTCAGCCATATTCTAGATCCCAAATTGGATTCCTCACACCAGGAGGAAATGTTGAAGGTCCTCAACATTGGCCTCCTATGCACCAACCCTCTACCTAGCGACCGCCCGCCCATGAGACGAGTGGTTACAATGTTGTTAGAAGTTCGTATGGATTGCAATTCGATGATTGCATGGAGAAAAGGAAGATTGACTCCATATAATTTCGAAGATAGTGAAAATGCAGCATAG 3003 42.49 MPFCSFLFLLCFPLFSFALNQEGHILQAFKRSIEDRGNAFSSWNATDPDPCLWNGVTCDEHRQVISLELISSAISSTFPLQLCKLPHLLYLSLYNNTFHSILPPAISNCTTLEFLDLGQNLLTGSIPSSIADLRHLRYLDLSGNNFSGRIPPSFGQFPQLEAFSLISNLVGGTVPPFLGNITSLKMMNLSYNSFDPGRIPPELGNLMNLEVLWLTGCKLQGEIPDSFRGLKNLILLDLSSNNLTGVFPKALTELTHVTQIELFGNYMSGALPDTFSKLKALRMFDVSMNNFSGPIPSSLFELPLESLNAFENNFEGSLPESMAKSRSLKEIKLFANKFTGALPVDLGKYSALASLDISNNFFSGSIPENLCAKGALTEIMMINNLFSGELPSSLGNCQSLTRIRLGNNNFTGPVPENIWGLPDVSLLELTNNTFSGKISKKIGNSKMLSMILISRNNFSGTIPREIGSLKNLVEFSADHNKLIGNIPDSIMKLNRLAKLDLRNNKLSGLLDHRLYAWERLNELNLANNNFSGKIPPAIAFLPVLNYLDLSGNQFSGEIPHGLQNVNLNVLNLSYNHLTGILPSYFERSMYKNSFLGNPGLCKGENDACHLIHSSKSGGRGGEEKECDEEGGCLWLQRSIFVFVGVTLFVGAVLFHVKYKTFVKTRSLNIKSKWIMTSFQKLSFDYDDIVDSLDEDNVIGSGGSCLVYKIVLANGETIAVKKLWPELPDDCKSIDLENNCTEVNAFDAEVMTLGEIRHKNIVKLLCCCTNGECNLLVYEYMPNGSLGDMLHGIKKELLDWQTRYKIALDAAEGLSYLHHDCVPPIIHRDVKSNNILLDAEFGAKIADFGIAMTVDISKVKTMSVIAGSCGYIAPEYAYTLNVNEKSDIFSYGMVILELITGRRPTDLECEENDLVKWVRTTLEGKGLSHILDPKLDSSHQEEMLKVLNIGLLCTNPLPSDRPPMRRVVTMLLEVRMDCNSMIAWRKGRLTPYNFEDSENAA* 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29405707 29409357 + CsaV3_6G050430.1 Csa06g03657 535284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03657 1000 ProSiteProfiles Protein kinase domain profile. 692 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03657 1000 SMART serkin_6 692 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03657 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Csa06g03657 1000 SUPERFAMILY RNI-like 270 588 - -
Csa06g03657 1000 ProSiteProfiles Leucine-rich repeat profile. 566 587 IPR001611 GO:0005515
Csa06g03657 1000 Gene3D Phosphorylase Kinase; domain 1 675 779 - -
Csa06g03657 1000 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 982 - -
Csa06g03657 1000 Gene3D Ribonuclease Inhibitor 19 175 IPR032675 -
Csa06g03657 1000 Gene3D Ribonuclease Inhibitor 176 304 IPR032675 -
Csa06g03657 1000 Gene3D Ribonuclease Inhibitor 305 615 IPR032675 -
Csa06g03657 1000 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Csa06g03657 1000 SMART LRR_typ_2 541 564 IPR003591 -
Csa06g03657 1000 SMART LRR_typ_2 85 109 IPR003591 -
Csa06g03657 1000 SMART LRR_typ_2 230 253 IPR003591 -
Csa06g03657 1000 SMART LRR_typ_2 133 157 IPR003591 -
Csa06g03657 1000 SMART LRR_typ_2 493 517 IPR003591 -
Csa06g03657 1000 SMART LRR_typ_2 278 302 IPR003591 -
Csa06g03657 1000 SMART LRR_typ_2 565 587 IPR003591 -
Csa06g03657 1000 SMART LRR_typ_2 181 206 IPR003591 -
Csa06g03657 1000 SUPERFAMILY L domain-like 42 301 - -
Csa06g03657 1000 Pfam Leucine rich repeat 208 266 IPR001611 GO:0005515
Csa06g03657 1000 Pfam Leucine rich repeat 86 146 IPR001611 GO:0005515
Csa06g03657 1000 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515
Csa06g03657 1000 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 7 982 - -
Csa06g03657 1000 Pfam Leucine Rich Repeat 566 586 IPR001611 GO:0005515
Csa06g03657 1000 Pfam Protein kinase domain 694 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03657 1000 SUPERFAMILY Protein kinase-like (PK-like) 678 971 IPR011009 -
Csa06g03657 1000 Gene3D Transferase(Phosphotransferase) domain 1 780 985 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04526 Csa-Chr3:39463518 Csa06g03657 Csa-Chr6:29405707 0 dispersed
Csa06g03657 Csa-Chr6:29405707 Csa07g00312 Csa-Chr7:2331519 0 dispersed
Csa01g01260 Csa-Chr1:7844689 Csa06g03657 Csa-Chr6:29405707 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78444 PF00069 Pkinase 7.90E-40 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03657 - - csv:101223091 1938.31