Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03662 ATGGGTGCTCTCATCGATCTAAATACTACTGAAGAAGATGAATCTCACTCTCCCGCTGGTTCCTCTGTTTCTTCTTCCTCCGCTTCTGCTTTAACTTCCTCTCCTTCGCCTTCTGTTACTTCCTCAATTTGCTTGGAGTTATGGCATGCTTGTGCTGGCCCTCTCACGTCTTTGCCCAAGAAGGGGAGTTTGGTTGTCTACTTGCCCCAGGGTCACTTCGAACAGATGCAAGAATTTCCGCCTACACCTTATGATCTCCCTCCTCACATCCTCTGCCGCGTCATTGATGTTCAGCTTCATCAGGCTGAAGCTGGGAGTGACGAGGTTTATGCTCAGGTCTCGTTGTTTCCTGAAAACGAGCAAATGGAGCACAAGATGCAGGAAGAGATGAATAATGACAGCGAGGAGGAGGATGTTGAAGAAGGTGAAAAGACTACAACACCCCACATGTTCTGCAAGACTCTTACTGCTTCCGACACTAGTACTCATGGAGGCTTCTCTGTCCCTAGACGTGCAGCTGAGGATTGCTTCCCGCCATTGGATTATAATCAACAGAGGCCTTCACAAGAGCTTGTAGCAAAGGATCTCCTTGGCCTAAAATGGAAGTTCAGGCACATATATCGCGGGCAGCCTAGAAGGCATTTGCTGACCACTGGATGGAGTGCTTTTGTGAACAAGAAAAGGCTTGTTTCTGGAGATGCAGTGCTTTTTCTTAGGGGCAATGATGGTGAATTAAGACTGGGGATTCGAAGAGCTGCACAGCTTAAAAGTGGTTCTGCCTTCTCTAATATTTGCAGTCAGCAGCTCAACTCTAGTAGTATCATGGATGTGGTTAATGCTGTATCCTCAAAAAGTTCTTTTAGCGTATGCTACAATCCGAGGGCTGCGTCTTCACAGTTTGTCTTGCCTTTTCACAAGTTCTTGAAGAGCATTAACCATTCTTTTTCTGTTGGATTGAGGTTTAGACTGAGTTTTGAAACCGATGATGGGGCAGATCGAAGACACACTGGACATATAACTGGAGTTAGCGATGTGGATCCTATCAGATGGCCGGGATCAAGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGCGAAACTAACAGGCATGGAAGGGTTTCCCCTTGGGAGATCGAGCCCTCTGGTTCTGTTTCTCTGTCCACCAACTTGGTTCCACCTGGTCTGAAAAGAACCAGAATTGGGCTCTCTTCCACAAAACTAGAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCCCTGACGGTGACAACAACAATCGTTGTCCACCTGAAAAGAGGAGATTGATCCCTGGTTTACATGGTTCTGGGATAGCTCTGATGAGAAATGGTCCAAGAAACCCACTTATCAACTCCGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTCCAATACCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCCTATTATGGTAGGGCCGTGGCCACCAATGAAGTTAAGGCAAATGGTGGTTGCAGTCCTGCCGACGGCATTCGATTGCCTAGGACTAAAGATGGATGGCCCATGGCAATGCAGTGTGAAAATTTCCTCACTCGGTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCTTCCGTGTTCATGTTTCAGCAGTCAATGGTTCCTGTTCAAAGCTTTAATTCACATAACCGTGGCAATTTCGCAGAACAGAGGATTATGAACAAAAGTACATCCCATCATTCTGGGACAACATTTATGACCGACCATAGCATGAACACTGAATTCATCCCACAAGGCATGTGTCCCACTTCATTGGGAGAGCAGAATCAGCTCGGGCTATCACATCCTTCAACAACAACAGCATCAGCAGCGTTTACAGTCAGTAAAGATCTGTCTTCCACTTGCAAAGCTGGCTGTAGATTGTTTGGTTTTTCATTGACAGAGGAAAAGAATGTTGGGAATAAAGACGACAAGGGTTCTTCAGCTACAACTCCCATTAATGCAGGAACAACCACTGTTCTTTCCAATATGGGAGTACAATGTCCTTTGAAGTCTCCTCTGATGAACAAGGTGGTTGGAAGCAACTGCACCAAAGGGGCTTTTCAGTACCACCTTGCAAATTACAATACCTACTACTGA 2199 46.02 MGALIDLNTTEEDESHSPAGSSVSSSSASALTSSPSPSVTSSICLELWHACAGPLTSLPKKGSLVVYLPQGHFEQMQEFPPTPYDLPPHILCRVIDVQLHQAEAGSDEVYAQVSLFPENEQMEHKMQEEMNNDSEEEDVEEGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKSGSAFSNICSQQLNSSSIMDVVNAVSSKSSFSVCYNPRAASSQFVLPFHKFLKSINHSFSVGLRFRLSFETDDGADRRHTGHITGVSDVDPIRWPGSRWRSLMVRWDDGETNRHGRVSPWEIEPSGSVSLSTNLVPPGLKRTRIGLSSTKLEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPPDGDNNNRCPPEKRRLIPGLHGSGIALMRNGPRNPLINSETSSRGIVFDESFQYHKVLQGQEIFPSPYYGRAVATNEVKANGGCSPADGIRLPRTKDGWPMAMQCENFLTRSSIPSVQVSSPSSVFMFQQSMVPVQSFNSHNRGNFAEQRIMNKSTSHHSGTTFMTDHSMNTEFIPQGMCPTSLGEQNQLGLSHPSTTTASAAFTVSKDLSSTCKAGCRLFGFSLTEEKNVGNKDDKGSSATTPINAGTTTVLSNMGVQCPLKSPLMNKVVGSNCTKGAFQYHLANYNTYY* 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29437655 29443835 - CsaV3_6G050480.1 Csa06g03662 535289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03662 732 MobiDBLite consensus disorder prediction 1 35 - -
Csa06g03662 732 MobiDBLite consensus disorder prediction 14 35 - -
Csa06g03662 732 SMART B3_2 151 253 IPR003340 GO:0003677
Csa06g03662 732 Gene3D - 314 388 - -
Csa06g03662 732 Gene3D - 149 253 IPR015300 -
Csa06g03662 732 CDD B3_DNA 149 251 IPR003340 GO:0003677
Csa06g03662 732 Pfam Auxin response factor 278 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa06g03662 732 SUPERFAMILY DNA-binding pseudobarrel domain 146 260 IPR015300 -
Csa06g03662 732 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 724 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa06g03662 732 PANTHER AUXIN RESPONSE FACTOR 3 34 724 - -
Csa06g03662 732 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Csa06g03662 732 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01677 Csa-Chr6:14680434 Csa06g03662 Csa-Chr6:29437655 9.09E-143 dispersed
Csa06g03662 Csa-Chr6:29437655 Csa01g00009 Csa-Chr1:68012 2.41E-113 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32199 PF02362 B3 1.60E-21 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03662 K14486 - csv:101220018 1400.57