Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03664 ATGGGAAAACATTCGAAGACCAGTTGCAAGTCGGCCTCCCACAAGCTATTTAAGGATAAGGCAAAGAACCGGGTTGATGATCTACAAAGTATATTTGTAGATTTGCAGTATGCAAGGAAAGAGAGCCGCACAGTTGATGTGACGGTTCTCGAGGAACAAGTCCATCAGATGCTTCGCGAGTGGAAAGCTGAGCTGAACGAGCCTTCTCCAGCATCCTCTTTGCAACAAGGTGGAAGTCTTGGGTCATTTTCATCGGACATTTGTCGATTGTTACAACTTTGCGAGGAGGATGATGATGCGTCTAGTCCATTAGCTGCTCCTAAGCCTGAACCTAATGAACAAAATTTGCAGGTTGGAGATACTATGGCACTTCAAGAGGGATTTAATGTGAATCGTGTACACCAAGAACAAGGCTTCCCTCTAGTGGATCAACGCAAGAACTCCCCTTCAGGGGTTCATGGTATGGCTATGAATAACTTGGAAGGACCTGCACATTTGGAGTGTCATCAGTTTGATTTGCATCAGGGCATTGAGCACAACTTTTACTCTATCCTTAATGGTAGAGGATTGTGTGGGGAGGGTGCAATTCCTCATGTTTCTAGCTACTGTCCCAGCATTTGCCCTCCACCTGCTGCTTTTTTAGGCCCAAAATGTGCACTTTGGGATTGCCCACGACCTGCCCAAGGGATGGATTGGTGTGAGGACTACTGTAGCAGCTTCCATGCTGCCTTAGCATTGAATGAAGGCCCTCCTGGAATGGGTCCAGTTTTACGACCTGGTGGAATTGGTCTGAAGGATGGTTTGCTTTTTGCTGCTCTTAGTGCAAAGGCACAAGGGAAAGATGTTGGTATCCCTGAATGTGAAGGAGCTGCCACCGCGAAATCCCCATGGAATGCTCCTGAGCTTTTTGATCTGTCAATACTGGAGGGTGAAATGATTAGGGAGTGGCTTTTCTTTGATAAGCCTCGTAGAGCATTTGAGAGTGGGAATAGAAAGCAGAGGTCACTGCCTGATTACAGTGGACGTGGTTGGCATGAGTCAAGAAAGCAAGTAATGAATGAGTTTGGAGGGCTGAAAAGATCTTATTACATGGATCCTCAGCCATTGAACCACTTTGAGTGGCATCTTTATGAATATGAAATTAACAAGTACGACGCCTGCGCTTTGTATAGATTGGAGCTGAAACTTGTTGATGGGAAAAAAGGTTCTAAGGCAAAGGTATCTAATGATTCAGTTGCTGATTTACAGAGGCAAATGGGGAGACTGACTGCTGAATTTCCTGATAATAAACGCTTTGTTAAGGGGAGGACCAGGATTAACACAAAAGTTGGTCTTGGAAATGTTTACCCCTCAGGAAATAGAGTCATGCCGCCCAGTGGAACATATGACTATATGCTTCATGCACAATATGACTACCTTGTGGAGAATTTGAGTGAATATTACCTTACATAG 1452 44.9 MGKHSKTSCKSASHKLFKDKAKNRVDDLQSIFVDLQYARKESRTVDVTVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEDDDASSPLAAPKPEPNEQNLQVGDTMALQEGFNVNRVHQEQGFPLVDQRKNSPSGVHGMAMNNLEGPAHLECHQFDLHQGIEHNFYSILNGRGLCGEGAIPHVSSYCPSICPPPAAFLGPKCALWDCPRPAQGMDWCEDYCSSFHAALALNEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNAPELFDLSILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDACALYRLELKLVDGKKGSKAKVSNDSVADLQRQMGRLTAEFPDNKRFVKGRTRINTKVGLGNVYPSGNRVMPPSGTYDYMLHAQYDYLVENLSEYYLT* 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29459015 29470420 + CsaV3_6G050500.1 Csa06g03664 535291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03664 483 PANTHER TRANSCRIPTION FACTOR VOZ1 1 483 - -
Csa06g03664 483 PANTHER TRANSCRIPTION FACTOR VOZ1 1 483 IPR039277 GO:0006355|GO:0048578
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01856 Csa-Chr4:18302368 Csa06g03664 Csa-Chr6:29459015 6.77E-29 dispersed
Csa02g02636 Csa-Chr2:22956134 Csa06g03664 Csa-Chr6:29459015 1.84E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32200 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03664 - - csv:101219536 992.645