Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03677 ATGGGTTCTGGACGTTGGTTTAAGGCAGTAATTCGCTTAAAAAAAGTGAAAACCAGCAGTTCGAAACAAACTAAGGAGAAATTGGATGATTTTCAAAAAGATTCCCCAAGGTTTAAAAGTGATGGTGCTAATGGGAACAGTAAGTCTCTTTCAATGCCGATTGAAGATGTAGCTGCAGTTCGGATTCAGACGGCATACCGAGCATATCGTGCCAGGAAAAATTTACGTCTCTTGAAAGGGGCCTTCAGACTGCAGAATTTGACTCAAGGTCATTCCGTTAGAAAGCATGCTACATCTACATTAGGTTATCTTCATTCATGGAGCCATATACAGGCTCAAATTAGGGCTCGTCGACTTTGTATGGTGACAGAAGGACGACAGAGACAAAAAAGATTAGAAAATCAACGAAAACTTGAAGCTAAGCTTCATGATATAGAGGTGGAGTGGTGTGGGGGTGCAGACTCCATGGACGGGATTCTTTCAAGGATACATGATAGAGAAGAAGCAGCTGTTAAGCGCGAGCGTGCTATGGCATACGCATTCTCACATCAGTGGAGAGCAAACTCTAATGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCTGCTCGTCCATGGGAAAGCCGTGTACCATCTCAGTTTGTTAGTCCAAAGAAATCTACAATCAGACAATCAAGCAAAGTCAGTAAGAGAAACTCACCATCCCCTAAAGCACGAGGTCCAATGAAACCTCCTTCCCCGAATGGGAAATCATCTGCAAAGGCTCGGAGGTTGTCTTATCCAGCAACAGAGAAAGCCGAGAAACTGGCTACACAAGAGAAAGGCGTCAAAGAAAGCGTTAAAAATGACAAGAATGACGAAGGGAACACCAAGAAAGAAGAAACAACACCCTAA 933 43.52 MGSGRWFKAVIRLKKVKTSSSKQTKEKLDDFQKDSPRFKSDGANGNSKSLSMPIEDVAAVRIQTAYRAYRARKNLRLLKGAFRLQNLTQGHSVRKHATSTLGYLHSWSHIQAQIRARRLCMVTEGRQRQKRLENQRKLEAKLHDIEVEWCGGADSMDGILSRIHDREEAAVKRERAMAYAFSHQWRANSNEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQFVSPKKSTIRQSSKVSKRNSPSPKARGPMKPPSPNGKSSAKARRLSYPATEKAEKLATQEKGVKESVKNDKNDEGNTKKEETTP* 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29529046 29532283 + CsaV3_6G050630.1 Csa06g03677 535304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03677 310 MobiDBLite consensus disorder prediction 19 37 - -
Csa06g03677 310 MobiDBLite consensus disorder prediction 222 310 - -
Csa06g03677 310 ProSiteProfiles IQ motif profile. 55 83 IPR000048 GO:0005515
Csa06g03677 310 PANTHER IQ-DOMAIN 9 1 280 - -
Csa06g03677 310 MobiDBLite consensus disorder prediction 226 246 - -
Csa06g03677 310 MobiDBLite consensus disorder prediction 273 310 - -
Csa06g03677 310 Gene3D - 55 101 - -
Csa06g03677 310 MobiDBLite consensus disorder prediction 16 50 - -
Csa06g03677 310 PANTHER IQ-DOMAIN 5-RELATED 1 280 - -
Csa06g03677 310 Pfam IQ calmodulin-binding motif 58 76 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00841 Csa-Chr4:5888395 Csa06g03677 Csa-Chr6:29529046 3.00E-67 dispersed
Csa06g03677 Csa-Chr6:29529046 Csa06g00706 Csa-Chr6:5764857 3.47E-20 dispersed
Csa06g03677 Csa-Chr6:29529046 Csa05g02825 Csa-Chr5:28733999 7.13E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03677 - - csv:101220729 619.387