Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03677 ATGGGTTCTGGACGTTGGTTTAAGGCAGTAATTCGCTTAAAAAAAGTGAAAACCAGCAGTTCGAAACAAACTAAGGAGAAATTGGATGATTTTCAAAAAGATTCCCCAAGGTTTAAAAGTGATGGTGCTAATGGGAACAGTAAGTCTCTTTCAATGCCGATTGAAGATGTAGCTGCAGTTCGGATTCAGACGGCATACCGAGCATATCGTGCCAGGAAAAATTTACGTCTCTTGAAAGGGGCCTTCAGACTGCAGAATTTGACTCAAGGTCATTCCGTTAGAAAGCATGCTACATCTACATTAGGTTATCTTCATTCATGGAGCCATATACAGGCTCAAATTAGGGCTCGTCGACTTTGTATGGTGACAGAAGGACGACAGAGACAAAAAAGATTAGAAAATCAACGAAAACTTGAAGCTAAGCTTCATGATATAGAGGTGGAGTGGTGTGGGGGTGCAGACTCCATGGACGGGATTCTTTCAAGGATACATGATAGAGAAGAAGCAGCTGTTAAGCGCGAGCGTGCTATGGCATACGCATTCTCACATCAGTGGAGAGCAAACTCTAATGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCTGCTCGTCCATGGGAAAGCCGTGTACCATCTCAGTTTGTTAGTCCAAAGAAATCTACAATCAGACAATCAAGCAAAGTCAGTAAGAGAAACTCACCATCCCCTAAAGCACGAGGTCCAATGAAACCTCCTTCCCCGAATGGGAAATCATCTGCAAAGGCTCGGAGGTTGTCTTATCCAGCAACAGAGAAAGCCGAGAAACTGGCTACACAAGAGAAAGGCGTCAAAGAAAGCGTTAAAAATGACAAGAATGACGAAGGGAACACCAAGAAAGAAGAAACAACACCCTAA 933 43.52 MGSGRWFKAVIRLKKVKTSSSKQTKEKLDDFQKDSPRFKSDGANGNSKSLSMPIEDVAAVRIQTAYRAYRARKNLRLLKGAFRLQNLTQGHSVRKHATSTLGYLHSWSHIQAQIRARRLCMVTEGRQRQKRLENQRKLEAKLHDIEVEWCGGADSMDGILSRIHDREEAAVKRERAMAYAFSHQWRANSNEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQFVSPKKSTIRQSSKVSKRNSPSPKARGPMKPPSPNGKSSAKARRLSYPATEKAEKLATQEKGVKESVKNDKNDEGNTKKEETTP* 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29529046 29532283 + CsaV3_6G050630.1 Csa06g03677 535304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03677 310 MobiDBLite consensus disorder prediction 19 37 - -
Csa06g03677 310 MobiDBLite consensus disorder prediction 222 310 - -
Csa06g03677 310 ProSiteProfiles IQ motif profile. 55 83 IPR000048 GO:0005515
Csa06g03677 310 PANTHER IQ-DOMAIN 9 1 280 - -
Csa06g03677 310 MobiDBLite consensus disorder prediction 226 246 - -
Csa06g03677 310 MobiDBLite consensus disorder prediction 273 310 - -
Csa06g03677 310 Gene3D - 55 101 - -
Csa06g03677 310 MobiDBLite consensus disorder prediction 16 50 - -
Csa06g03677 310 PANTHER IQ-DOMAIN 5-RELATED 1 280 - -
Csa06g03677 310 Pfam IQ calmodulin-binding motif 58 76 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03677 - - - csv:101220729 619.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00841 Csa-Chr4:5888395 Csa06g03677 Csa-Chr6:29529046 3.00E-67 dispersed
Csa06g03677 Csa-Chr6:29529046 Csa06g00706 Csa-Chr6:5764857 3.47E-20 dispersed
Csa06g03677 Csa-Chr6:29529046 Csa05g02825 Csa-Chr5:28733999 7.13E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g183 . . Bda02g00019 . . Bpe01g00879 . . . . . Cma07g00203 . Car07g00168 . . . Bhi03g00330 . . . . . . Cla01g02298 Cam01g2409 Cec04g2056 . Clacu01g2430 Cmu01g2294 Cre04g1962 Cone1ag0191 Cone5ag1677 . . Lsi01g00265 Csa06g03677 . Cme08g00247 . . . . . . . Bma11g01010 . . Cmo07g00202 . . . . Cpe19g01052 . . . . . . . . . . . . . . . . . Chy02g00253 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01776 . 1 470 IQD Protein Family AT3G52290 55.6 5.8e-104 374.8
Csa01g03281 . 1 406 IQD Protein Family AT3G22190 57.6 9.8e-96 347.4
Csa04g02549 . 1 438 IQD Protein Family AT2G26180 60.5 3.4e-117 418.7
Csa06g03677 . 1 274 IQD Protein Family AT2G33990 52.9 1.5e-62 236.5
Csa04g00841 . 217 392 IQD Protein Family AT2G33990 54.7 7.3e-49 191.0
Csa06g03677 . 1 232 IQD Protein Family AT3G15050 51.3 1.2e-56 216.9
Csa04g00841 . 220 393 IQD Protein Family AT3G15050 61.6 7.4e-54 207.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37