Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03703 ATGGCTGAGGTTCATAGTAGCAACACCGATGGAATTAAACTTTTTGGAACTATGATTCATTTACAAACCCGAAAATTGAAGGAGGAACCAGAGAAAGGAGGATCGGTCGCCGGCGGTGGTGAAGGTGATGAAACAGAGATGAAGAGGCCGGAAAAGATTATTCCATGTCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCTAGACATTTCTGCAAGGGTTGTCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGTAACGTACCCATCGGAGCTGGTCGTCGAAGAGCCAAGCCGCCGCCTAATTGCCGGACCCTTTCCGGCGAGCTGTCTGAGGATTATGGGCAGTATTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTGGATACGGTGGAGGGGTGGCATCTGACGGTGGCGGAACAGGATTTTACCAAAGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGTCAATCGTCTTAA 522 48.08 MAEVHSSNTDGIKLFGTMIHLQTRKLKEEPEKGGSVAGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRTLSGELSEDYGQYYDAASGIIHQLELDTVEGWHLTVAEQDFTKVFPFKRRKIIGQHGQSS* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29624602 29625795 - CsaV3_6G050890.1 Csa06g03703 535330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03703 173 MobiDBLite consensus disorder prediction 23 49 - -
Csa06g03703 173 Pfam Dof domain, zinc finger 52 107 IPR003851 GO:0003677|GO:0006355
Csa06g03703 173 PANTHER CYCLIC DOF FACTOR 2 7 166 IPR045174 GO:0003700|GO:0006355
Csa06g03703 173 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
Csa06g03703 173 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 7 166 - -
Csa06g03703 173 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02327 Csa06g03703 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03825 Csa-Chr3:33707030 Csa06g03703 Csa-Chr6:29624602 1.41E-34 dispersed
Csa05g02462 Csa-Chr5:26447482 Csa06g03703 Csa-Chr6:29624602 3.60E-35 dispersed
Csa06g03703 Csa-Chr6:29624602 Csa01g02399 Csa-Chr1:21290901 1.19E-28 dispersed
Csa01g02327 Csa-Chr1:20417930 Csa06g03703 Csa-Chr6:29624602 5.75E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32204 PF02701 zf-Dof 1.20E-31 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03703 - - csv:101215015 364.385