Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03710 ATGGCCGACCGGCCCGACCCTGACAAGAAGACCGAAACCACCAGGAAAGATATGCCCGCCCTTCTCCTTGGCCGATACGAGATCGGGAAGCTCCTTGGCCATGGCACCTTCGCCAAGGTCTACCATGCCCGAAACATCAAAACCAACGATAGCGTAGCCATTAAAGTCATCGACAAGGAGAAGATCCTCAAGGGCGGTTTAATCGCTCACATCAAACGCGAGATCTCAATCCTCCGACGTGTTCGACATCCTAATATTGTGCAACTCTTCGAGGTTATGGCCACTAAGGCCAAGATCTACTTCGTTATGGAATACGTCCGCGGAGGTGAGCTTTTCAAGAAGGTCTCCAAGGGCCGATTGAAGGAAGAGGTCGCACGGAAGTACTTTCAGCAATTAATCTCCGCCGTCGCTTTCTGTCACGCCCGTGGTGTTTATCATCGCGACCTTAAACCGGAGAACTTACTGCTCGATGAGAATGGGAATCTCAAGGTCTCCGATTTTGGCCTCAGCGCCGTCTCCGATCAAATTCGACAAGATGGGTTGTTTCATACTTTTTGTGGTACTCCGGCGTATGTGGCTCCGGAGGTTTTGGCCCGGAAAGGCTACGAGGCCGCGAAGGTCGATATTTGGTCATGTGGGGTTATTCTGTTTGTTTTAATGGCAGGTTATTTACCCTTCCACGACCAAAACATTATGGCAATGTATAAGAAGATTTACAAAGGGGAGTTCCGTTGTCCGAGATGGTTCTCGCCGGAGCTAATTCGACTTCTAACACGTCTTTTAGATACAAATCCCGAAACTCGTTTCACAATTCCTGAAATCATGGAGAATAGATGGTTCAAAAAGGGGTATAAGCATATCAAATTCTACATCGAAGATGATAAGGTATGCAGCATTGAGGATGATACCGATGATGTTGATTCCTTGTCGGATCAGTCACAATCGGAATCGGATTCCGAAATAATTGAGACCAGACGAAAGGTTACCTCACTCCCAAGACCCGCGAGTTTGAATGCATTTGATATAATTTCGTTTTCACCGGGATTTGATCTTTCTGGATTATTTGAAGATGGAGGGGAAGAGGCAAGATTTGTGTCAAGTGCTCCGGTGTCGAAGATTATATCAAAATTGGAGGAGATTGCAAAATTGGTGAGTTTCACTGTGAGGAAGAAGGATTGCAGGGTTAGTTTAGAGGGGTCACGGGAAGGAGTGAAAGGGCCATTGACAATCGCAGCTGAGGTATTCGAGTTAACGCCGAAATTGGTGATGGTAGAGGTGAAGAGGAAAGGGGGAGATAAAGAAGAGTATGAGCAGTTCTGTAACAATGAATTGAAGCCAGCATTGTTGAATCTGAAGGTGGAGGATTCTGGTGATCCTTCACATATACCATCAGATACTGAATGA 1404 46.51 MADRPDPDKKTETTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKTNDSVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELIRLLTRLLDTNPETRFTIPEIMENRWFKKGYKHIKFYIEDDKVCSIEDDTDDVDSLSDQSQSESDSEIIETRRKVTSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEVFELTPKLVMVEVKRKGGDKEEYEQFCNNELKPALLNLKVEDSGDPSHIPSDTE* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29666281 29669298 - CsaV3_6G050960.1 Csa06g03710 535337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03710 467 CDD STKc_SnRK3 25 279 - -
Csa06g03710 467 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Csa06g03710 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Csa06g03710 467 Gene3D Kinase associated domain 1, KA1 335 452 - -
Csa06g03710 467 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 19 462 - -
Csa06g03710 467 CDD CIPK_C 338 448 - -
Csa06g03710 467 SUPERFAMILY Protein kinase-like (PK-like) 22 324 IPR011009 -
Csa06g03710 467 SMART serkin_6 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03710 467 Gene3D Transferase(Phosphotransferase) domain 1 17 334 - -
Csa06g03710 467 PANTHER - 19 462 - -
Csa06g03710 467 MobiDBLite consensus disorder prediction 303 325 - -
Csa06g03710 467 Pfam NAF domain 334 390 IPR004041 GO:0007165
Csa06g03710 467 ProSiteProfiles NAF domain profile. 332 356 IPR018451 GO:0007165
Csa06g03710 467 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03710 467 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02318 Csa06g03710 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00268 Csa-Chr2:1847249 Csa06g03710 Csa-Chr6:29666281 0 dispersed
Csa04g02637 Csa-Chr4:25743103 Csa06g03710 Csa-Chr6:29666281 7.17E-164 dispersed
Csa06g03710 Csa-Chr6:29666281 Csa06g03811 Csa-Chr6:30243812 1.30E-164 dispersed
Csa03g03149 Csa-Chr3:29258036 Csa06g03710 Csa-Chr6:29666281 1.43E-46 transposed
Csa06g00838 Csa-Chr6:6726476 Csa06g03710 Csa-Chr6:29666281 4.42E-48 transposed
Csa06g01610 Csa-Chr6:13852353 Csa06g03710 Csa-Chr6:29666281 3.72E-165 transposed
Csa01g02318 Csa-Chr1:20282952 Csa06g03710 Csa-Chr6:29666281 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78446 PF00069 Pkinase 6.20E-76 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03710 - - csv:101214053 898.656