Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03712 ATGGAAGTTGTAAAAGTAGCTCTGCTACTGTTATTCTTCATCTGGGTGGTCTCTGCCTCAGACAGTCATTTGTCTCCCAAAGGAGTAAACTATGAAGTGGCGGCTTTGATGTCAATGAAGAGTAGGATAAAGGACGAGCGGAGAGTGATGCAAGGATGGGACATAAATTCGGTCGATCCATGCACCTGGAATATGGTTGCTTGCTCTACTGAGGGATTTGTGATTTCTCTTGAGATGCCAAATATGGGTTTATCTGGAACGCTTTCCCCTAGCATTGGGAACCTGAGTCATCTTAGGATAATGTTGTTGCAAAATAATGAGTTATCTGGTCCAATTCCCGATGATATAGGAGAACTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGTTCGTAGGCGGGATTCCAAGTTCTTTGGGCTTTCTTACTCGTTTAAATTACTTGAAGCTCAGTAGTAACAAGTTAAGTGGACCAATACCAGAATCTGTTGCAAATATCTCAGGCCTTTCCTTTTTGGATTTATCGAACAATAATCTCAGTGGTCCAACTCCTAGAATACTTGCGAAAGAGTACAGTGTGGCAGGGAATAGCTTCCTTTGTGCATCTTCATTATCTAAATTTTGTGGTGTAGTTCCGAAGCCAGTTAATGAAACTGGTTTGTCTCAGAAAGATAATGGCCGTCATCACTTGGTTCTTTACATAGCTCTAATTGTGAGTTTCACATTTGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCACATCCTACGTGCAGCAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGCGAGCTACAAAAGGCAACAAGTAATTTTAGTCCCCAAAACATTCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCAAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAACCTCTTACGTTTATATGGCTTTTGTATGACCCCAGATGAGAGATTGCTGGTTTATCCTTATATGCCAAATGGGAGTGTTGCTGACCGTCTTAGAGATGCAGGCCAAGAGAAGCCTTCATTGAATTGGAACAGAAGATTGTGTATTGCCGTTGGCGCAGCACGTGGACTTCTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCGGTGGTCGGCGATTTTGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGAGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTTGAACTCTTGACAGGGCAAAAAGCACTTGATGCTGGCAATGGTCAAATTCGAAAGGGAATGATCCTCGAATGGGTTAGAACATTACATGAGGAGAAGAGGTTAGATGTGCTGGTGGACAGGGATCTTAAAGGATGTTTTGATGCCATGGAGCTTGAAAAATGTGTAGAGTTGGCTCTGCAGTGTACTCAATCACATCCACAACTTCGACCAAAGATGTCCGATATCCTGAAGATTCTAGAAGGTCTCGTTGGACAGTCTAGCCAAATGGAGGAATCACCAGTTGGAGCAAGTCTTTATGAGGATAGACCTCACAGTTTCTCAAGAAATTACAGTGATATTCATGAAGAATCTTCATTTGTGGTCGAAGCCATGGAGCTTTCAGGACCTCGGTGA 1851 41.98 MEVVKVALLLLFFIWVVSASDSHLSPKGVNYEVAALMSMKSRIKDERRVMQGWDINSVDPCTWNMVACSTEGFVISLEMPNMGLSGTLSPSIGNLSHLRIMLLQNNELSGPIPDDIGELSELQTLDLSNNQFVGGIPSSLGFLTRLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYSVAGNSFLCASSLSKFCGVVPKPVNETGLSQKDNGRHHLVLYIALIVSFTFVVSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATSNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLCIAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQIRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKCVELALQCTQSHPQLRPKMSDILKILEGLVGQSSQMEESPVGASLYEDRPHSFSRNYSDIHEESSFVVEAMELSGPR* 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29681231 29684811 + CsaV3_6G050980.1 Csa06g03712 535339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03712 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Csa06g03712 616 Gene3D Ribonuclease Inhibitor 29 211 IPR032675 -
Csa06g03712 616 ProSiteProfiles Protein kinase domain profile. 293 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03712 616 Pfam Protein kinase domain 296 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03712 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 616 - -
Csa06g03712 616 SUPERFAMILY Protein kinase-like (PK-like) 277 592 IPR011009 -
Csa06g03712 616 Pfam Leucine Rich Repeat 122 143 IPR001611 GO:0005515
Csa06g03712 616 SMART serkin_6 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03712 616 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Csa06g03712 616 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Csa06g03712 616 Gene3D Transferase(Phosphotransferase) domain 1 369 578 - -
Csa06g03712 616 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 616 - -
Csa06g03712 616 SUPERFAMILY L domain-like 31 192 - -
Csa06g03712 616 Gene3D Phosphorylase Kinase; domain 1 263 368 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02769 Csa-Chr4:26547824 Csa06g03712 Csa-Chr6:29681231 4.11E-108 dispersed
Csa05g02551 Csa-Chr5:26917973 Csa06g03712 Csa-Chr6:29681231 0 dispersed
Csa06g03712 Csa-Chr6:29681231 Csa06g00289 Csa-Chr6:2107583 1.30E-180 dispersed
Csa06g03712 Csa-Chr6:29681231 Csa05g03065 Csa-Chr5:30756982 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78448 PF00069 Pkinase 5.00E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03712 - - csv:101218118 1201.81