Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03720 ATGATGTCCAAATCGTATACCAATCTTTTAGATTTAGCTTCTGGGAATTTTCCCATTATGGGTCGTGAGAAGAAGCGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCAGAGCTTGATGATGATCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTTGTGCAAGACCGAATAATTATTGTTGCCAATCAGCTTCCTATTAAAGCTAAGCGTAGACCGGACAATAAAGGGTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTCTGGCAGCTTAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTTTTGTGAACAAGAAGATGTATCACAACTTTTGTTGGAGAGGTTTAAGTGTGTTCCAGCGTTTTTACCTCATGACATTTTATCTAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCGCTCTTCCATTATATGCTTCCGTTCTCTGCAACTCATGGTGGTCGGTTTGACCGCTCTCTGTGGGAAGCATATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATAAACCCAGATGATGACTTTGTATGGATTCATGATTATCATCTAATGGTGCTACCCTCCTTCTTGAGGAGAAGGTTTACAAGACTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCATCAGAAATATATAGGACATTGCCAGTGAGGGAAGAGATTCTTAAGGCACTTTTGAATGCAGACCTTATTGGTTTTCACACTTTTGATTATGCTCGACATTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGAATATCAGTCAAAGAGGGGCTATATTGGCTTGGAATATTTTGGAAGGACCGTGGGGATTAAAATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTTGCTGACAAAGACTGGAGGGTACAGGAGCTCAAGCGACAGTTTGAAGGAAAAGTTGTGTTACTTGGAGTTGATGATATGGATATTTTTAAAGGGGTCAATCTGAAGTTGTTGGCAATGGAACAGATGCTGCGGCAACATCCAAAGTGGCAGGGAAGAGCCGTTTTCGTACAGATTGCAAACCCAGCTAGAGGAAGAGGGAAAGATCTCGAGGAAATACAAGATGAAATACAGGAATGCTGCCAGAGAATTAATGAAAGTTTTGGACAGCCAAATTATGAGCCAATTGTGTTCATTGATCGGCCTGTTTCTCTTGTTGAAAGAGCGGCATATTATACCATTGCTGAATGTGTTGTAGTCACAGCGGTGAGGGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGCAGGCAGGGATCCCCTGGATCAGATTATAGCTCAGAAACAAATGGACCACAAAAGAGCATGCTAGTCATATCTGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCAATACGGGTTAACCCATGGAACATTGAATCCACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGAAGCTGAAAAGCAATTGCGCCATGAGAAGCATTATAAATATGTGAGTACACACGATGTGGCATACTGGTCAAGGAGTTTTTTCCAAGATATGGAAAGAACTTGCAAGGATCACTTTAGAAGACGGTGCTGGGGAATTGGGTTGGGCTTTGGTTTCAGGGTTGTAGCACTTGATCCTAACTTTAGAAAGCTGTCTATTGATGCCATTGTAGCTGCATATTCGAGGTCTAAAAGGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCGCAAACTTCAATCGATAAGACCCCAAGTCGCCAGGTGATTTCAATCATAGATTCACTTTGTGATGATGTTAGGAATACTGTTTTTGTGGTCAGTGGAAGAGGGCGTGAAAGTTTGGGCAATTGGTTTTCTCCTTGCGATAAACTTGGAATTGCTGCCGAGCATGGCTATTTTATGAGGTGGTCTGCCGATAAGGACTGGGAGAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATTGCAGAGCCAGTCATGAAATTATACACAGAAGCTACTGACGGCTCATCTATTGAAACCAAGGAAAGTGGCTTGGTGTGGCATCACCAGGATGCAGACCCTGATTTCGGTTGCAGCCAGGCAAAAGAATTATTGGACCACCTTGAAAGTGTGCTGGCCAATGAACCAGTCGCTGTAAAAAGTGGTCAGTTTATTGTAGAAGTAAAGCCACAGGGAGTCAGTAAAGGCTTGGTGGCAGAAAAGATCTTCACGTCAATGGCAGAAGCAGGAAGACGGGCTGATTTTGTGCTTTGCATTGGTGATGACAGATCTGATGAAGACATGTTTGAGATAATTGGTAATGCAGTGTCAAGTGGCTCCCTCTCTTCCAATACATTAGTTTTTGCCTGCACAGTTGGACAGAAACCAAGCAAGGCCAAGTATTACTTAGATGACACAACTGAGGTCATTAATATGCTTGAAGCCCTTGCAGAAGTTTCGGACATATCTTCTCCTCCAGAATCCCCTTGA 2553 42.85 MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVAGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLRVDVDFCEQEDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLRQHPKWQGRAVFVQIANPARGRGKDLEEIQDEIQECCQRINESFGQPNYEPIVFIDRPVSLVERAAYYTIAECVVVTAVRDGMNLTPYEYVVCRQGSPGSDYSSETNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIESTAEALNEAISMAEAEKQLRHEKHYKYVSTHDVAYWSRSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSRQVISIIDSLCDDVRNTVFVVSGRGRESLGNWFSPCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESGLVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMAEAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGSLSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP* 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29732744 29739621 + CsaV3_6G051060.1 Csa06g03720 535347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03720 850 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Csa06g03720 850 CDD HAD_TPP 591 832 - -
Csa06g03720 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Csa06g03720 850 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Csa06g03720 850 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 798 IPR006379 -
Csa06g03720 850 Gene3D Glycogen Phosphorylase B; 50 320 - -
Csa06g03720 850 Gene3D Glycogen Phosphorylase B; 321 528 - -
Csa06g03720 850 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED 1 842 - -
Csa06g03720 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 842 IPR001830 GO:0003824|GO:0005992
Csa06g03720 850 Gene3D - 589 704 IPR023214 -
Csa06g03720 850 Gene3D - 718 845 IPR023214 -
Csa06g03720 850 TIGRFAM T6PP: trehalose-phosphatase 587 838 IPR003337 GO:0003824|GO:0005992
Csa06g03720 850 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0003824|GO:0005992
Csa06g03720 850 SUPERFAMILY HAD-like 590 838 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00151 Csa-Chr3:1167633 Csa06g03720 Csa-Chr6:29732744 0 dispersed
Csa04g00475 Csa-Chr4:2999397 Csa06g03720 Csa-Chr6:29732744 2.10E-08 dispersed
Csa05g02351 Csa-Chr5:25831660 Csa06g03720 Csa-Chr6:29732744 0 dispersed
Csa06g03170 Csa-Chr6:26988634 Csa06g03720 Csa-Chr6:29732744 2.81E-13 dispersed
Csa06g03720 Csa-Chr6:29732744 Csa07g00478 Csa-Chr7:3465683 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03720 K16055 - csv:101213082 1723.75