Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03720 | ATGATGTCCAAATCGTATACCAATCTTTTAGATTTAGCTTCTGGGAATTTTCCCATTATGGGTCGTGAGAAGAAGCGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCAGAGCTTGATGATGATCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTTGTGCAAGACCGAATAATTATTGTTGCCAATCAGCTTCCTATTAAAGCTAAGCGTAGACCGGACAATAAAGGGTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTCTGGCAGCTTAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTTTTGTGAACAAGAAGATGTATCACAACTTTTGTTGGAGAGGTTTAAGTGTGTTCCAGCGTTTTTACCTCATGACATTTTATCTAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCGCTCTTCCATTATATGCTTCCGTTCTCTGCAACTCATGGTGGTCGGTTTGACCGCTCTCTGTGGGAAGCATATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATAAACCCAGATGATGACTTTGTATGGATTCATGATTATCATCTAATGGTGCTACCCTCCTTCTTGAGGAGAAGGTTTACAAGACTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCATCAGAAATATATAGGACATTGCCAGTGAGGGAAGAGATTCTTAAGGCACTTTTGAATGCAGACCTTATTGGTTTTCACACTTTTGATTATGCTCGACATTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGAATATCAGTCAAAGAGGGGCTATATTGGCTTGGAATATTTTGGAAGGACCGTGGGGATTAAAATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTTGCTGACAAAGACTGGAGGGTACAGGAGCTCAAGCGACAGTTTGAAGGAAAAGTTGTGTTACTTGGAGTTGATGATATGGATATTTTTAAAGGGGTCAATCTGAAGTTGTTGGCAATGGAACAGATGCTGCGGCAACATCCAAAGTGGCAGGGAAGAGCCGTTTTCGTACAGATTGCAAACCCAGCTAGAGGAAGAGGGAAAGATCTCGAGGAAATACAAGATGAAATACAGGAATGCTGCCAGAGAATTAATGAAAGTTTTGGACAGCCAAATTATGAGCCAATTGTGTTCATTGATCGGCCTGTTTCTCTTGTTGAAAGAGCGGCATATTATACCATTGCTGAATGTGTTGTAGTCACAGCGGTGAGGGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGCAGGCAGGGATCCCCTGGATCAGATTATAGCTCAGAAACAAATGGACCACAAAAGAGCATGCTAGTCATATCTGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCAATACGGGTTAACCCATGGAACATTGAATCCACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGAAGCTGAAAAGCAATTGCGCCATGAGAAGCATTATAAATATGTGAGTACACACGATGTGGCATACTGGTCAAGGAGTTTTTTCCAAGATATGGAAAGAACTTGCAAGGATCACTTTAGAAGACGGTGCTGGGGAATTGGGTTGGGCTTTGGTTTCAGGGTTGTAGCACTTGATCCTAACTTTAGAAAGCTGTCTATTGATGCCATTGTAGCTGCATATTCGAGGTCTAAAAGGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCGCAAACTTCAATCGATAAGACCCCAAGTCGCCAGGTGATTTCAATCATAGATTCACTTTGTGATGATGTTAGGAATACTGTTTTTGTGGTCAGTGGAAGAGGGCGTGAAAGTTTGGGCAATTGGTTTTCTCCTTGCGATAAACTTGGAATTGCTGCCGAGCATGGCTATTTTATGAGGTGGTCTGCCGATAAGGACTGGGAGAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATTGCAGAGCCAGTCATGAAATTATACACAGAAGCTACTGACGGCTCATCTATTGAAACCAAGGAAAGTGGCTTGGTGTGGCATCACCAGGATGCAGACCCTGATTTCGGTTGCAGCCAGGCAAAAGAATTATTGGACCACCTTGAAAGTGTGCTGGCCAATGAACCAGTCGCTGTAAAAAGTGGTCAGTTTATTGTAGAAGTAAAGCCACAGGGAGTCAGTAAAGGCTTGGTGGCAGAAAAGATCTTCACGTCAATGGCAGAAGCAGGAAGACGGGCTGATTTTGTGCTTTGCATTGGTGATGACAGATCTGATGAAGACATGTTTGAGATAATTGGTAATGCAGTGTCAAGTGGCTCCCTCTCTTCCAATACATTAGTTTTTGCCTGCACAGTTGGACAGAAACCAAGCAAGGCCAAGTATTACTTAGATGACACAACTGAGGTCATTAATATGCTTGAAGCCCTTGCAGAAGTTTCGGACATATCTTCTCCTCCAGAATCCCCTTGA | 2553 | 42.85 | MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVAGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLRVDVDFCEQEDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLRQHPKWQGRAVFVQIANPARGRGKDLEEIQDEIQECCQRINESFGQPNYEPIVFIDRPVSLVERAAYYTIAECVVVTAVRDGMNLTPYEYVVCRQGSPGSDYSSETNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIESTAEALNEAISMAEAEKQLRHEKHYKYVSTHDVAYWSRSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSRQVISIIDSLCDDVRNTVFVVSGRGRESLGNWFSPCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESGLVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMAEAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGSLSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP* | 851 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 29732744 | 29739621 | + | CsaV3_6G051060.1 | Csa06g03720 | 535347 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03720 | 850 | CDD | GT20_TPS | 60 | 543 | IPR001830 | GO:0003824|GO:0005992 | |
Csa06g03720 | 850 | CDD | HAD_TPP | 591 | 832 | - | - | |
Csa06g03720 | 850 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 59 | 547 | - | - | |
Csa06g03720 | 850 | Pfam | Glycosyltransferase family 20 | 60 | 543 | IPR001830 | GO:0003824|GO:0005992 | |
Csa06g03720 | 850 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 592 | 798 | IPR006379 | - | |
Csa06g03720 | 850 | Gene3D | Glycogen Phosphorylase B; | 50 | 320 | - | - | |
Csa06g03720 | 850 | Gene3D | Glycogen Phosphorylase B; | 321 | 528 | - | - | |
Csa06g03720 | 850 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED | 1 | 842 | - | - | |
Csa06g03720 | 850 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 1 | 842 | IPR001830 | GO:0003824|GO:0005992 | |
Csa06g03720 | 850 | Gene3D | - | 589 | 704 | IPR023214 | - | |
Csa06g03720 | 850 | Gene3D | - | 718 | 845 | IPR023214 | - | |
Csa06g03720 | 850 | TIGRFAM | T6PP: trehalose-phosphatase | 587 | 838 | IPR003337 | GO:0003824|GO:0005992 | |
Csa06g03720 | 850 | Pfam | Trehalose-phosphatase | 593 | 827 | IPR003337 | GO:0003824|GO:0005992 | |
Csa06g03720 | 850 | SUPERFAMILY | HAD-like | 590 | 838 | IPR036412 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00151 | Csa-Chr3:1167633 | Csa06g03720 | Csa-Chr6:29732744 | 0 | dispersed | |
Csa04g00475 | Csa-Chr4:2999397 | Csa06g03720 | Csa-Chr6:29732744 | 2.10E-08 | dispersed | |
Csa05g02351 | Csa-Chr5:25831660 | Csa06g03720 | Csa-Chr6:29732744 | 0 | dispersed | |
Csa06g03170 | Csa-Chr6:26988634 | Csa06g03720 | Csa-Chr6:29732744 | 2.81E-13 | dispersed | |
Csa06g03720 | Csa-Chr6:29732744 | Csa07g00478 | Csa-Chr7:3465683 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03720 | K16055 | - | csv:101213082 | 1723.75 |