Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03720 ATGATGTCCAAATCGTATACCAATCTTTTAGATTTAGCTTCTGGGAATTTTCCCATTATGGGTCGTGAGAAGAAGCGACTTCCACGAGTAATGACTGTTGCGGGGGTAATATCAGAGCTTGATGATGATCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTTGTGCAAGACCGAATAATTATTGTTGCCAATCAGCTTCCTATTAAAGCTAAGCGTAGACCGGACAATAAAGGGTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTCTGGCAGCTTAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTTTTGTGAACAAGAAGATGTATCACAACTTTTGTTGGAGAGGTTTAAGTGTGTTCCAGCGTTTTTACCTCATGACATTTTATCTAAATTTTATCATGGTTTTTGTAAGCAGCAATTGTGGCCGCTCTTCCATTATATGCTTCCGTTCTCTGCAACTCATGGTGGTCGGTTTGACCGCTCTCTGTGGGAAGCATATGTAGCAGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATAAACCCAGATGATGACTTTGTATGGATTCATGATTATCATCTAATGGTGCTACCCTCCTTCTTGAGGAGAAGGTTTACAAGACTGAGAATGGGCTTTTTTCTTCACAGTCCATTTCCTTCATCAGAAATATATAGGACATTGCCAGTGAGGGAAGAGATTCTTAAGGCACTTTTGAATGCAGACCTTATTGGTTTTCACACTTTTGATTATGCTCGACATTTCCTGTCTTGTTGTAGTCGGATGTTGGGTTTGGAATATCAGTCAAAGAGGGGCTATATTGGCTTGGAATATTTTGGAAGGACCGTGGGGATTAAAATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGACTTGCTGACAAAGACTGGAGGGTACAGGAGCTCAAGCGACAGTTTGAAGGAAAAGTTGTGTTACTTGGAGTTGATGATATGGATATTTTTAAAGGGGTCAATCTGAAGTTGTTGGCAATGGAACAGATGCTGCGGCAACATCCAAAGTGGCAGGGAAGAGCCGTTTTCGTACAGATTGCAAACCCAGCTAGAGGAAGAGGGAAAGATCTCGAGGAAATACAAGATGAAATACAGGAATGCTGCCAGAGAATTAATGAAAGTTTTGGACAGCCAAATTATGAGCCAATTGTGTTCATTGATCGGCCTGTTTCTCTTGTTGAAAGAGCGGCATATTATACCATTGCTGAATGTGTTGTAGTCACAGCGGTGAGGGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGCAGGCAGGGATCCCCTGGATCAGATTATAGCTCAGAAACAAATGGACCACAAAAGAGCATGCTAGTCATATCTGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCAATACGGGTTAACCCATGGAACATTGAATCCACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGAAGCTGAAAAGCAATTGCGCCATGAGAAGCATTATAAATATGTGAGTACACACGATGTGGCATACTGGTCAAGGAGTTTTTTCCAAGATATGGAAAGAACTTGCAAGGATCACTTTAGAAGACGGTGCTGGGGAATTGGGTTGGGCTTTGGTTTCAGGGTTGTAGCACTTGATCCTAACTTTAGAAAGCTGTCTATTGATGCCATTGTAGCTGCATATTCGAGGTCTAAAAGGAGGGCTATACTTTTGGATTATGATGGCACTGTCATGCCGCAAACTTCAATCGATAAGACCCCAAGTCGCCAGGTGATTTCAATCATAGATTCACTTTGTGATGATGTTAGGAATACTGTTTTTGTGGTCAGTGGAAGAGGGCGTGAAAGTTTGGGCAATTGGTTTTCTCCTTGCGATAAACTTGGAATTGCTGCCGAGCATGGCTATTTTATGAGGTGGTCTGCCGATAAGGACTGGGAGAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATTGCAGAGCCAGTCATGAAATTATACACAGAAGCTACTGACGGCTCATCTATTGAAACCAAGGAAAGTGGCTTGGTGTGGCATCACCAGGATGCAGACCCTGATTTCGGTTGCAGCCAGGCAAAAGAATTATTGGACCACCTTGAAAGTGTGCTGGCCAATGAACCAGTCGCTGTAAAAAGTGGTCAGTTTATTGTAGAAGTAAAGCCACAGGGAGTCAGTAAAGGCTTGGTGGCAGAAAAGATCTTCACGTCAATGGCAGAAGCAGGAAGACGGGCTGATTTTGTGCTTTGCATTGGTGATGACAGATCTGATGAAGACATGTTTGAGATAATTGGTAATGCAGTGTCAAGTGGCTCCCTCTCTTCCAATACATTAGTTTTTGCCTGCACAGTTGGACAGAAACCAAGCAAGGCCAAGTATTACTTAGATGACACAACTGAGGTCATTAATATGCTTGAAGCCCTTGCAGAAGTTTCGGACATATCTTCTCCTCCAGAATCCCCTTGA 2553 42.85 MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVAGVISELDDDQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDNKGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLRVDVDFCEQEDVSQLLLERFKCVPAFLPHDILSKFYHGFCKQQLWPLFHYMLPFSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLRLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLRQHPKWQGRAVFVQIANPARGRGKDLEEIQDEIQECCQRINESFGQPNYEPIVFIDRPVSLVERAAYYTIAECVVVTAVRDGMNLTPYEYVVCRQGSPGSDYSSETNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIESTAEALNEAISMAEAEKQLRHEKHYKYVSTHDVAYWSRSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKTPSRQVISIIDSLCDDVRNTVFVVSGRGRESLGNWFSPCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESGLVWHHQDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMAEAGRRADFVLCIGDDRSDEDMFEIIGNAVSSGSLSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP* 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29732744 29739621 + CsaV3_6G051060.1 Csa06g03720 535347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03720 850 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Csa06g03720 850 CDD HAD_TPP 591 832 - -
Csa06g03720 850 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Csa06g03720 850 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Csa06g03720 850 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 798 IPR006379 -
Csa06g03720 850 Gene3D Glycogen Phosphorylase B; 50 320 - -
Csa06g03720 850 Gene3D Glycogen Phosphorylase B; 321 528 - -
Csa06g03720 850 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED 1 842 - -
Csa06g03720 850 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 842 IPR001830 GO:0003824|GO:0005992
Csa06g03720 850 Gene3D - 589 704 IPR023214 -
Csa06g03720 850 Gene3D - 718 845 IPR023214 -
Csa06g03720 850 TIGRFAM T6PP: trehalose-phosphatase 587 838 IPR003337 GO:0003824|GO:0005992
Csa06g03720 850 Pfam Trehalose-phosphatase 593 827 IPR003337 GO:0003824|GO:0005992
Csa06g03720 850 SUPERFAMILY HAD-like 590 838 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03720 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101213082 1723.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00151 Csa-Chr3:1167633 Csa06g03720 Csa-Chr6:29732744 0 dispersed
Csa04g00475 Csa-Chr4:2999397 Csa06g03720 Csa-Chr6:29732744 2.10E-08 dispersed
Csa05g02351 Csa-Chr5:25831660 Csa06g03720 Csa-Chr6:29732744 0 dispersed
Csa06g03170 Csa-Chr6:26988634 Csa06g03720 Csa-Chr6:29732744 2.81E-13 dispersed
Csa06g03720 Csa-Chr6:29732744 Csa07g00478 Csa-Chr7:3465683 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g251 . Blo11g00266 . . . . Bma14g00980 . . . Cma03g01336 Cma07g00170 Car03g01201 . . . Cpe10g00131 . . . . . . . Cla01g02336 Cam01g2449 Cec04g2098 Cco04g2173 Clacu01g2471 Cmu01g2336 Cre04g2005 Cone1ag0222 Cone5ag1644 . . Lsi01g00224 Csa06g03720 . Cme08g00207 Blo08g00611 . . Bda07g00964 . . Bma07g00825 . . Cmo03g01337 Cmo07g00166 . . . . Cpe19g01083 . . . . . . . . . . . . . . . . . Chy02g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g00202 . 45 596 Trehalose Biosynthesis Gene Families AT4G24040 56.6 2.0e-190 662.5
Csa07g00478 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1373.6
Csa06g03720 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1350.5
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1152.9
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1093.2
Csa01g00164 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.2e-304 1041.6
Csa04g02256 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.1 1.7e-248 855.5
Csa01g02281 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.8 7.1e-242 833.6
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.4 0.0e+00 1349.0
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1213.4
Csa03g00151 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1109.7
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1109.7
Csa07g00478 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.7 0.0e+00 1095.5
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 72.5 0.0e+00 1327.4
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 68.0 0.0e+00 1231.9
Csa06g03720 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.3 0.0e+00 1084.3
Csa03g00151 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.9 0.0e+00 1080.9
Csa07g00478 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 3.8e-312 1067.4
Csa03g00151 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.5 0.0e+00 1266.1
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.6
Csa07g00478 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.9 0.0e+00 1138.6
Csa05g02351 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1108.6
Csa01g00164 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1093.6
Csa05g02351 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1195.6
Csa01g00164 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1106.3
Csa06g03720 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.5 6.4e-293 1003.4
Csa07g00478 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 3.5e-291 997.7
Csa03g00151 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 4.9e-285 977.2
Csa04g02256 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.8 0.0e+00 1476.5
Csa01g02281 . 1 932 Trehalose Biosynthesis Gene Families AT1G78580 73.3 0.0e+00 1357.4
Csa05g02351 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 60.9 1.8e-306 1048.5
Csa01g00164 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 7.4e-300 1026.5
Csa06g03720 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.8e-299 1024.6
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.4e-298 1021.5
Csa07g00478 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 2.0e-289 991.9
Csa03g00151 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1381.7
Csa06g03720 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.1 0.0e+00 1186.0
Csa07g00478 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.0 0.0e+00 1156.7
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.6
Csa01g00164 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1107.4
Csa04g02256 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.6 1.3e-303 1038.9
Csa01g02281 . 92 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 4.1e-289 990.7
Csa04g02256 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.8 0.0e+00 1476.5
Csa01g02281 . 1 932 Trehalose Biosynthesis Gene Families AT1G78580 73.3 0.0e+00 1357.4
Csa04g02256 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.1 1.7e-248 855.5
Csa01g02281 . 87 695 Trehalose Biosynthesis Gene Families AT1G16980 64.8 7.1e-242 833.6
Csa04g02256 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 3.8e-194 675.2
Csa01g02281 . 92 610 Trehalose Biosynthesis Gene Families AT1G17000 61.7 1.1e-190 663.7
Csa04g02256 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.6 1.3e-303 1038.9
Csa01g02281 . 92 933 Trehalose Biosynthesis Gene Families AT4G27550 59.3 4.1e-289 990.7
Csa03g00151 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1381.7
Csa06g03720 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.1 0.0e+00 1186.0
Csa07g00478 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.0 0.0e+00 1156.7
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.6 0.0e+00 1135.6
Csa01g00164 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1107.4
Csa03g00151 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.5 0.0e+00 1266.1
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.6
Csa07g00478 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.9 0.0e+00 1138.6
Csa05g02351 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.5 0.0e+00 1108.6
Csa01g00164 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.3 0.0e+00 1093.6
Csa07g00478 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1373.6
Csa06g03720 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1350.5
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.6 0.0e+00 1152.9
Csa05g02351 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1093.2
Csa01g00164 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 2.2e-304 1041.6
Csa05g02351 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.1 0.0e+00 1195.6
Csa01g00164 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1106.3
Csa06g03720 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.5 6.4e-293 1003.4
Csa07g00478 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 3.5e-291 997.7
Csa03g00151 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 4.9e-285 977.2
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G23870 74.4 0.0e+00 1349.0
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1213.4
Csa03g00151 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1109.7
Csa06g03720 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1109.7
Csa07g00478 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.7 0.0e+00 1095.5
Csa05g02351 . 1 861 Trehalose Biosynthesis Gene Families AT1G60140 72.5 0.0e+00 1327.4
Csa01g00164 . 1 856 Trehalose Biosynthesis Gene Families AT1G60140 68.0 0.0e+00 1231.9
Csa06g03720 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.3 0.0e+00 1084.3
Csa03g00151 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.9 0.0e+00 1080.9
Csa07g00478 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 59.9 3.8e-312 1067.4
Csa05g02351 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 60.9 1.8e-306 1048.5
Csa01g00164 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 7.4e-300 1026.5
Csa06g03720 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.8e-299 1024.6
Csa03g00151 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.4e-298 1021.5
Csa07g00478 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 2.0e-289 991.9
Csa05g00202 . 45 596 Trehalose Biosynthesis Gene Families AT4G24040 56.6 2.0e-190 662.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73