Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03729 ATGGCTGAGATTTCAGGATCAAGCAATGGACATCATTCTGTTTCTTTGAACATCAAAGATGAATCCCCAGCCATCACCAGCAGAGAAGTAGCAGCTGAATGGGTTTCTGTATCTTTCATTCAAAAGTTGATTGCTGAGGTTGTGGGGACATATTTCTTGATATTTGCTGGTGGGGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTCATCAGTTTCCCAGGGATCGCAATTGTTTGGGGTTTGGTTGTAATGGTGATGGTTTATTCTGTTGGTCATATATCTGGTGCTCATTTCAACCCTGCTGTTACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATCTCTCAAGTTCTTGGATCAACATTGGCTGCTGGGACACTTAGGCTAATATTTAATGGACACCAAGATCATTTTTCAGGGACTCTCCCAAGTGATTCATATCTGCAAACCTTTGTGATTGAATTCATCATCACATTTTATCTCATGTTTGTAGTGTCTGGTGTTGCCACTGATAATAGAGCTATTGGCGAACTTGCTGGACTTGCTGTTGGTGCTACTGTTCTTCTCAACGTTATGTTTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGTTTGGGACCTGCTATAGTATCAAGGCAATTCAAAGGGTTATGGATATACATTGTAGCTCCCATTTTTGGTGCAATTACAGGTGCTTTGGTTTACAATACAATCAGGTTCACTGACAAGCCTCTACGAGAGATCACTAAAAGTGCTTCTTTTCTCAAAGGACAAAGTCGCAAAGGTTCATCTTGA 831 41.88 MAEISGSSNGHHSVSLNIKDESPAITSREVAAEWVSVSFIQKLIAEVVGTYFLIFAGGASVVVNLSKDKVISFPGIAIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVISQVLGSTLAAGTLRLIFNGHQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPIFGAITGALVYNTIRFTDKPLREITKSASFLKGQSRKGSS* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29782797 29785060 + CsaV3_6G051150.1 Csa06g03729 535356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03729 276 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Csa06g03729 276 SUPERFAMILY Aquaporin-like 34 261 IPR023271 -
Csa06g03729 276 PANTHER AQUAPORIN NIP1-1-RELATED 1 269 - -
Csa06g03729 276 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g03729 276 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g03729 276 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g03729 276 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g03729 276 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g03729 276 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g03729 276 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g03729 276 Gene3D Glycerol uptake facilitator protein. 6 262 IPR023271 -
Csa06g03729 276 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g03729 276 Pfam Major intrinsic protein 33 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa06g03729 276 PANTHER AQUAPORIN NIP2-1 1 269 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01364 Csa-Chr3:10276633 Csa06g03729 Csa-Chr6:29782797 3.50E-46 dispersed
Csa03g02160 Csa-Chr3:18624553 Csa06g03729 Csa-Chr6:29782797 3.71E-105 dispersed
Csa03g03840 Csa-Chr3:33799515 Csa06g03729 Csa-Chr6:29782797 5.14E-76 dispersed
Csa03g03841 Csa-Chr3:33831117 Csa06g03729 Csa-Chr6:29782797 3.64E-76 dispersed
Csa05g00129 Csa-Chr5:660752 Csa06g03729 Csa-Chr6:29782797 2.53E-72 dispersed
Csa05g00130 Csa-Chr5:666923 Csa06g03729 Csa-Chr6:29782797 1.71E-69 dispersed
Csa06g03729 Csa-Chr6:29782797 Csa05g00429 Csa-Chr5:2845610 2.11E-29 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03729 K09874 - csv:101219297 526.554