Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03729 | ATGGCTGAGATTTCAGGATCAAGCAATGGACATCATTCTGTTTCTTTGAACATCAAAGATGAATCCCCAGCCATCACCAGCAGAGAAGTAGCAGCTGAATGGGTTTCTGTATCTTTCATTCAAAAGTTGATTGCTGAGGTTGTGGGGACATATTTCTTGATATTTGCTGGTGGGGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTCATCAGTTTCCCAGGGATCGCAATTGTTTGGGGTTTGGTTGTAATGGTGATGGTTTATTCTGTTGGTCATATATCTGGTGCTCATTTCAACCCTGCTGTTACCATAGCCTTTGCCACTACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATCTCTCAAGTTCTTGGATCAACATTGGCTGCTGGGACACTTAGGCTAATATTTAATGGACACCAAGATCATTTTTCAGGGACTCTCCCAAGTGATTCATATCTGCAAACCTTTGTGATTGAATTCATCATCACATTTTATCTCATGTTTGTAGTGTCTGGTGTTGCCACTGATAATAGAGCTATTGGCGAACTTGCTGGACTTGCTGTTGGTGCTACTGTTCTTCTCAACGTTATGTTTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGTTTGGGACCTGCTATAGTATCAAGGCAATTCAAAGGGTTATGGATATACATTGTAGCTCCCATTTTTGGTGCAATTACAGGTGCTTTGGTTTACAATACAATCAGGTTCACTGACAAGCCTCTACGAGAGATCACTAAAAGTGCTTCTTTTCTCAAAGGACAAAGTCGCAAAGGTTCATCTTGA | 831 | 41.88 | MAEISGSSNGHHSVSLNIKDESPAITSREVAAEWVSVSFIQKLIAEVVGTYFLIFAGGASVVVNLSKDKVISFPGIAIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVISQVLGSTLAAGTLRLIFNGHQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPIFGAITGALVYNTIRFTDKPLREITKSASFLKGQSRKGSS* | 277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 29782797 | 29785060 | + | CsaV3_6G051150.1 | Csa06g03729 | 535356 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03729 | 276 | ProSitePatterns | MIP family signature. | 98 | 106 | IPR022357 | - | |
Csa06g03729 | 276 | SUPERFAMILY | Aquaporin-like | 34 | 261 | IPR023271 | - | |
Csa06g03729 | 276 | PANTHER | AQUAPORIN NIP1-1-RELATED | 1 | 269 | - | - | |
Csa06g03729 | 276 | PRINTS | Major intrinsic protein family signature | 41 | 60 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g03729 | 276 | PRINTS | Major intrinsic protein family signature | 80 | 104 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g03729 | 276 | PRINTS | Major intrinsic protein family signature | 117 | 136 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g03729 | 276 | PRINTS | Major intrinsic protein family signature | 162 | 180 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g03729 | 276 | PRINTS | Major intrinsic protein family signature | 193 | 215 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g03729 | 276 | PRINTS | Major intrinsic protein family signature | 230 | 250 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g03729 | 276 | CDD | MIP | 41 | 250 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g03729 | 276 | Gene3D | Glycerol uptake facilitator protein. | 6 | 262 | IPR023271 | - | |
Csa06g03729 | 276 | TIGRFAM | MIP: MIP family channel proteins | 45 | 247 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g03729 | 276 | Pfam | Major intrinsic protein | 33 | 247 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Csa06g03729 | 276 | PANTHER | AQUAPORIN NIP2-1 | 1 | 269 | IPR034294 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01364 | Csa-Chr3:10276633 | Csa06g03729 | Csa-Chr6:29782797 | 3.50E-46 | dispersed | |
Csa03g02160 | Csa-Chr3:18624553 | Csa06g03729 | Csa-Chr6:29782797 | 3.71E-105 | dispersed | |
Csa03g03840 | Csa-Chr3:33799515 | Csa06g03729 | Csa-Chr6:29782797 | 5.14E-76 | dispersed | |
Csa03g03841 | Csa-Chr3:33831117 | Csa06g03729 | Csa-Chr6:29782797 | 3.64E-76 | dispersed | |
Csa05g00129 | Csa-Chr5:660752 | Csa06g03729 | Csa-Chr6:29782797 | 2.53E-72 | dispersed | |
Csa05g00130 | Csa-Chr5:666923 | Csa06g03729 | Csa-Chr6:29782797 | 1.71E-69 | dispersed | |
Csa06g03729 | Csa-Chr6:29782797 | Csa05g00429 | Csa-Chr5:2845610 | 2.11E-29 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03729 | K09874 | - | csv:101219297 | 526.554 |