Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03735 ATGACGAGTCCAGTTAAGTTTAAGTTGGGGAAACAGTCGTCCCTAGCGCCGGATGGAGATGTCCATCTTGAAGATTTGGAGGAGCTGGTCAAGCAGCATCAGACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTATTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAAGTCTTGGATTCGGGAGTTGATGTTAATTTCCGTGATATCGACAACCGGACGGCTTTGCATATTGCTGCTTGCCAGGGATTTGCCGACGTTGTCGCTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGAGATGCTATACATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGCGCAAAGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTGCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACTAACAGTGTGAACATTACCAAGGGAACATTCCGCAGAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACCGATGAGGAGAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAACGTTGTCCAGTTTCTAGGTGCTGTTACTCAAAGTTGGCCGATGATGATCGTTACAGAATATTTACCAAAGGGAGATCTTGGAGCATTATTGAGTAGAAAGAGAGAAATAAAAACAATGTCTGTTGTGAGACTTGCCCTTGATATTGCAAGGGGGATGAACTACTTGCATGAGAACAAGCCAGCACCAATTATTCATCGTAATCTTGAGCCTTCAAACATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAGATTTCGGAGTTAGCAAGTTATTGACAGTTAAAGAAGATAAATTTTCAACTTGTTCAGAGACTTCACGAAGATACCAAGCTCCAGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGACGTGTTTTCATTTGCTTTGATTTTGCAAGAGATGCTTGAAGGCTGTTCTCCATTTCCTGACAAAGCAGATAGTGAAGTTCCTAAATTGTACGCAGCAGGAGAACGTCCCCCATTTGGAGCATTAATTAAACGTTACGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAACGAGAAGCCAAATAAGAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCTGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATGCTTCCAGAATATTGAGGCAATGCTGAAGAAAGATCGTCTCCGCCGAAGCAGTTTCAATCTATCTTCACATTCTTCTGCCAGCAGTATTTGA 1383 43.89 MTSPVKFKLGKQSSLAPDGDVHLEDLEELVKQHQTEEGIDSRVRLMYLANEGDLEGINEVLDSGVDVNFRDIDNRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPLRDAIHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSVNITKGTFRRASWRGTEVAVKELGEDLFTDEEKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLGALLSRKREIKTMSVVRLALDIARGMNYLHENKPAPIIHRNLEPSNILRDDSGHLKVADFGVSKLLTVKEDKFSTCSETSRRYQAPEVFKNEEYDTKVDVFSFALILQEMLEGCSPFPDKADSEVPKLYAAGERPPFGALIKRYANGLKELIEECWNEKPNKRPTFRQIITQLEFIYNRFCHKRRWKVRPLKCFQNIEAMLKKDRLRRSSFNLSSHSSASSI* 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29804365 29808717 + CsaV3_6G051210.1 Csa06g03735 535362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03735 460 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 8 442 - -
Csa06g03735 460 SMART ANK_2a 40 69 IPR002110 GO:0005515
Csa06g03735 460 SMART ANK_2a 106 135 IPR002110 GO:0005515
Csa06g03735 460 SMART ANK_2a 73 102 IPR002110 GO:0005515
Csa06g03735 460 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Csa06g03735 460 Gene3D Transferase(Phosphotransferase) domain 1 234 455 - -
Csa06g03735 460 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 8 442 - -
Csa06g03735 460 PIRSF ILK 2 434 - -
Csa06g03735 460 Gene3D - 18 146 IPR036770 -
Csa06g03735 460 Gene3D Phosphorylase Kinase; domain 1 150 233 - -
Csa06g03735 460 CDD STKc_MAP3K-like 164 411 - -
Csa06g03735 460 Pfam Protein tyrosine and serine/threonine kinase 163 411 IPR001245 GO:0004672|GO:0006468
Csa06g03735 460 ProSiteProfiles Protein kinase domain profile. 123 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03735 460 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Csa06g03735 460 Pfam Ankyrin repeats (3 copies) 45 133 IPR002110 GO:0005515
Csa06g03735 460 SUPERFAMILY Protein kinase-like (PK-like) 167 415 IPR011009 -
Csa06g03735 460 SUPERFAMILY Ankyrin repeat 44 135 IPR036770 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02286 Csa06g03735 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03735 Csa-Chr6:29804365 Csa07g00501 Csa-Chr7:3598934 2.05E-135 dispersed
Csa05g02484 Csa-Chr5:26553717 Csa06g03735 Csa-Chr6:29804365 1.44E-105 transposed
Csa06g01376 Csa-Chr6:11696391 Csa06g03735 Csa-Chr6:29804365 0 transposed
Csa06g02508 Csa-Chr6:22324952 Csa06g03735 Csa-Chr6:29804365 5.42E-14 transposed
Csa01g02286 Csa-Chr1:20011245 Csa06g03735 Csa-Chr6:29804365 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78449 PF07714 PK_Tyr_Ser-Thr 3.50E-54 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03735 - - csv:101215728 899.427