Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03736 | ATGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCGCCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATTGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTTAAAAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAATATGCTAACAACAGTGTGAAGGCAACAATTGATAGATATAAGAAAGCATCCTCAGATTCCTCCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTATCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGCTAGGCGAGTCTCTAAGTTCTCTGACTGCAAAAGATCTGAAAGGCCTGGAGACCAAACTTGAGAAAGGAATTAGTAGAATTAGGTCCAAAAAGAATGAACTCCTGTTTGCTGAGATTGAGTATATGCGAAAAAGGGAAATTGATTTGCACAACAACAATCAGATGCTTCGGGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAGCATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCAATTAGTATAA | 714 | 40.34 | MFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLTAKDLKGLETKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQMLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALQLV* | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 29814029 | 29821076 | + | CsaV3_6G051220.1 | Csa06g03736 | 535363 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03736 | 237 | ProSiteProfiles | MADS-box domain profile. | 17 | 77 | IPR002100 | GO:0003677|GO:0046983 | |
Csa06g03736 | 237 | Gene3D | - | 29 | 111 | IPR036879 | GO:0003677|GO:0046983 | |
Csa06g03736 | 237 | Pfam | K-box region | 99 | 187 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa06g03736 | 237 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 26 | 73 | IPR002100 | GO:0003677|GO:0046983 | |
Csa06g03736 | 237 | CDD | MADS_MEF2_like | 18 | 94 | IPR033896 | GO:0000977|GO:0045944 | |
Csa06g03736 | 237 | PRINTS | MADS domain signature | 19 | 39 | IPR002100 | GO:0003677|GO:0046983 | |
Csa06g03736 | 237 | PRINTS | MADS domain signature | 39 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
Csa06g03736 | 237 | PRINTS | MADS domain signature | 54 | 75 | IPR002100 | GO:0003677|GO:0046983 | |
Csa06g03736 | 237 | PANTHER | MADS BOX PROTEIN | 11 | 231 | - | - | |
Csa06g03736 | 237 | ProSitePatterns | MADS-box domain signature. | 19 | 73 | IPR002100 | GO:0003677|GO:0046983 | |
Csa06g03736 | 237 | SMART | madsneu2 | 17 | 76 | IPR002100 | GO:0003677|GO:0046983 | |
Csa06g03736 | 237 | Coils | Coil | 140 | 160 | - | - | |
Csa06g03736 | 237 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Csa06g03736 | 237 | ProSiteProfiles | K-box domain profile. | 103 | 193 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa06g03736 | 237 | PANTHER | AGAMOUSB | 11 | 231 | - | - | |
Csa06g03736 | 237 | SUPERFAMILY | SRF-like | 18 | 92 | IPR036879 | GO:0003677|GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g02284 | Csa06g03736 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g03218 | Csa-Chr5:31724175 | Csa06g03736 | Csa-Chr6:29814029 | 1.01E-98 | dispersed | |
Csa06g01379 | Csa-Chr6:11768855 | Csa06g03736 | Csa-Chr6:29814029 | 9.10E-94 | dispersed | |
Csa06g02092 | Csa-Chr6:18659488 | Csa06g03736 | Csa-Chr6:29814029 | 2.89E-51 | dispersed | |
Csa06g02093 | Csa-Chr6:18670207 | Csa06g03736 | Csa-Chr6:29814029 | 9.68E-48 | dispersed | |
Csa06g03736 | Csa-Chr6:29814029 | Csa06g00601 | Csa-Chr6:5099335 | 2.24E-50 | dispersed | |
Csa04g01862 | Csa-Chr4:18359391 | Csa06g03736 | Csa-Chr6:29814029 | 1.99E-41 | transposed | |
Csa01g02284 | Csa-Chr1:19982103 | Csa06g03736 | Csa-Chr6:29814029 | 1.44E-108 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32208 | PF01486 | K-box | 8.40E-28 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03736 | K09264 | - | csv:101221430 | 458.759 |