Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03736 ATGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCGCCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATTGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTTAAAAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAATATGCTAACAACAGTGTGAAGGCAACAATTGATAGATATAAGAAAGCATCCTCAGATTCCTCCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTATCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGCTAGGCGAGTCTCTAAGTTCTCTGACTGCAAAAGATCTGAAAGGCCTGGAGACCAAACTTGAGAAAGGAATTAGTAGAATTAGGTCCAAAAAGAATGAACTCCTGTTTGCTGAGATTGAGTATATGCGAAAAAGGGAAATTGATTTGCACAACAACAATCAGATGCTTCGGGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAGCATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCAATTAGTATAA 714 40.34 MFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLTAKDLKGLETKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQMLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALQLV* 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29814029 29821076 + CsaV3_6G051220.1 Csa06g03736 535363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03736 237 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Csa06g03736 237 Gene3D - 29 111 IPR036879 GO:0003677|GO:0046983
Csa06g03736 237 Pfam K-box region 99 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g03736 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Csa06g03736 237 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Csa06g03736 237 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Csa06g03736 237 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Csa06g03736 237 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Csa06g03736 237 PANTHER MADS BOX PROTEIN 11 231 - -
Csa06g03736 237 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Csa06g03736 237 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Csa06g03736 237 Coils Coil 140 160 - -
Csa06g03736 237 MobiDBLite consensus disorder prediction 1 21 - -
Csa06g03736 237 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g03736 237 PANTHER AGAMOUSB 11 231 - -
Csa06g03736 237 SUPERFAMILY SRF-like 18 92 IPR036879 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02284 Csa06g03736 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g03218 Csa-Chr5:31724175 Csa06g03736 Csa-Chr6:29814029 1.01E-98 dispersed
Csa06g01379 Csa-Chr6:11768855 Csa06g03736 Csa-Chr6:29814029 9.10E-94 dispersed
Csa06g02092 Csa-Chr6:18659488 Csa06g03736 Csa-Chr6:29814029 2.89E-51 dispersed
Csa06g02093 Csa-Chr6:18670207 Csa06g03736 Csa-Chr6:29814029 9.68E-48 dispersed
Csa06g03736 Csa-Chr6:29814029 Csa06g00601 Csa-Chr6:5099335 2.24E-50 dispersed
Csa04g01862 Csa-Chr4:18359391 Csa06g03736 Csa-Chr6:29814029 1.99E-41 transposed
Csa01g02284 Csa-Chr1:19982103 Csa06g03736 Csa-Chr6:29814029 1.44E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32208 PF01486 K-box 8.40E-28 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03736 K09264 - csv:101221430 458.759