Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03762 ATGGAGAAGGAGCCTCTTCTTCCATATCTAAGCCCAAGAGGGAAACCGTCTCCCATACCTCCTCAATTATGTCCACTTCCTGAAAACGATGAAATTACTCTGCCTATGACGCCCACGGAGTTCAAAGACCGCTTGATCTTTGGTCCTTCATCGTCCCCACAAGACGCTTCTCCTATATTCGACGCTTTGACGCTATCTCTTTCCTCTTCGAGACCTTCTGCTTCATCTTCTCTTCAAGACCCATCTACACCTTTGGACCCAAGATCACAATCGCAGTCTCAACAGGCGTGGCTTGTGGATTCCAATTATACATGGCCCAAAAGCAACCTCCATCGCTCCAGAACTGCACCTGCCATGGCGGTCATCAACGATGTCAATCATTCGCAGGAGCCCAAGCCACAGTTTGGTAAACAGTCTATTATCCGCCAAGCGGTTGTTCTTCTAATTGTTTACTTATCATTGGGTGTGCTTATCTATTGGTTAAATCGTGATAATTTTTCGGCTCAAGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGTATTGTAACGATGTGCACTATTGGGTATGGAGATATTACCCCCAATAGTACGTCGACAAAGTTGTTCTCAGTATTGTTTGTGTTGGTGGGATTTGGGTTTATAGATATATTGCTCTCTGGAATGGTTAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTGAGGAATGTAAAGAGGGGGGTGAAGCGTGAATCTGGGAAGTCCTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAGGTGGCATTGGCCTTAGGTGTTGTGATCCTTTGTATAGGGGTTGGCATGGGTGTTATGCATTTTGTTGAGAACCTGGGATGGTTGGATTCATTTTATCTTTCAGTTATGTCTGTCACAACAGTTGGATATGGTGATCAGGCATTCAAGTCGATGACTGGTCGGATTTTTGCTTCAATCTGGTTGCTTGTATCGACCCTTGCTGTTGCTCGGGCCTTCCTTTATTTAGCGGAGGCAAGAGTAGATAAGCGGCATAGGATGATGGCAAAATGGATACTTGGTCAAGATATGACCGTTTCTGAGTTTCTTGCTGCTGATATTGACAACAATGGCTTTGTGAGGTACGCATTAAGATTATTCATTCAAACCCATTTAGAGAAGTTGCTTGGAAAATTGGATTTGATGTTACTGATTCTGATTGCCGAGAAGTTTTGCTTGCATTGTTTCATGAATATGCATGAGTATTTGTTGCATAAGTTTTATGAAACTGCCCATCTATTCTGCATCCAACTCAGCCTTCTGTTTGGCATAGTATCCCAACTCATGCCCATTATGCAATCTCAAAATCTTGTTGACAGTAGATTCTTCAAAATTATTACATTCAAGCCAACTCCCTCTCTGAGGCGGGTAGATACTTCGGACTTGGTTCATTTGAAGACTTCTACTTGGTGTATCACCTACACTTTTGCAATAATGATTCTCTTGTTTGATTCTGATATGACAATAATCAAAACTCATGTAGATGTAGAGAGGGTGTCTTCAAAGACTATAGACTTTGCAGAGGAAAATGTTGGGATACCAGTAGGGAATGCCAGTTTGAGTTCCGGCTTTCCTTCCCAATCATCCTATCCTTTTCAATTCCCCATATTCTTCTGCCCTCTTAAATATCCTAGTCTAGCAAGTTTGGCTAGTAGCTCATTTGGTACGCATATCATGTTCTCAATCAATAGGTCAGAATATGTGATATACAAGCTGAAGGAGATGGGTAAGGTATCAGAGAAAGATGTCATGCAGATTTCTAATAACTTTGATAGGCTAGACAGTGGCAAATGTGGGAAGATTACACTGGCTGATCTCTTGGAAAGTCATCACTGA 1884 41.88 MEKEPLLPYLSPRGKPSPIPPQLCPLPENDEITLPMTPTEFKDRLIFGPSSSPQDASPIFDALTLSLSSSRPSASSSLQDPSTPLDPRSQSQSQQAWLVDSNYTWPKSNLHRSRTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLIVYLSLGVLIYWLNRDNFSAQETHPVVDALYFCIVTMCTIGYGDITPNSTSTKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVKRESGKSYIIDVKKGRMRIRMKVALALGVVILCIGVGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVRYALRLFIQTHLEKLLGKLDLMLLILIAEKFCLHCFMNMHEYLLHKFYETAHLFCIQLSLLFGIVSQLMPIMQSQNLVDSRFFKIITFKPTPSLRRVDTSDLVHLKTSTWCITYTFAIMILLFDSDMTIIKTHVDVERVSSKTIDFAEENVGIPVGNASLSSGFPSQSSYPFQFPIFFCPLKYPSLASLASSSFGTHIMFSINRSEYVIYKLKEMGKVSEKDVMQISNNFDRLDSGKCGKITLADLLESHH* 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29949293 29952784 + CsaV3_6G051480.1 Csa06g03762 535389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03762 627 PANTHER TWO-PORE POTASSIUM CHANNEL 3 578 622 - -
Csa06g03762 627 PANTHER TWO-PORE POTASSIUM CHANNEL 3 90 377 - -
Csa06g03762 627 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 578 622 IPR003280 GO:0005267|GO:0016020|GO:0071805
Csa06g03762 627 MobiDBLite consensus disorder prediction 11 25 - -
Csa06g03762 627 Gene3D - 248 355 - -
Csa06g03762 627 MobiDBLite consensus disorder prediction 1 32 - -
Csa06g03762 627 Pfam Ion channel 271 340 IPR013099 -
Csa06g03762 627 Pfam Ion channel 147 226 IPR013099 -
Csa06g03762 627 SUPERFAMILY Voltage-gated potassium channels 140 226 - -
Csa06g03762 627 Gene3D - 137 237 - -
Csa06g03762 627 SUPERFAMILY Voltage-gated potassium channels 255 359 - -
Csa06g03762 627 MobiDBLite consensus disorder prediction 71 93 - -
Csa06g03762 627 PRINTS Two pore domain K+ channel signature 183 211 IPR003280 GO:0005267|GO:0016020|GO:0071805
Csa06g03762 627 PRINTS Two pore domain K+ channel signature 303 312 IPR003280 GO:0005267|GO:0016020|GO:0071805
Csa06g03762 627 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 90 377 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03762 Csa-Chr6:29949293 Csa07g00911 Csa-Chr7:7773569 2.36E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03762 K05389 - csv:101220017 715.301