Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03763 | ATGTCGGATGAAATGTTTAAAGATTTATTTTATAGTGGGATGGATGAGTATGAGTCTATAGTGAGAGCTTTTGGAATAACATCGGATTATTCGAATATCAATAATGAAATTTCGGGGACGACTGCGATGAATTCTTCTTGTTCGTTGTCATCTTCGGATGCTGGAGGAGGCGAGGAGGATGATTCTGTGAAAGAGAAGGAGAAACAGATCAGTAAAGATGTTGTGGAAGATAACGGAGGGGAGAGTTCCAAGGCAGCTGGATCGGGTAAATCGAAGAAGAAAGGAGAGAAAAAAGAGAGAGAAGCGAGAGTCGCTTTCATGACCAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTCAAGAACAGTGCTTATCCCAGAAGCTATTACAGATGCACAACTCAAAAATGTGGAGTGAAAAAACGAGTAGAGAGATCCTACGAAGATCCGTCCATTGTAATTACAACCTATGAAGGTCAACACAACCACCTAATTCCGGCGACTTTAAGGGGGAACCTGTCGGCGGCGAGCGGGACATTTTCGCCGTCCATGCTGACGCCAATGCCAGTGGTCGGTGGCGTCGGGTTTCTGCCTGCAGAACTATTGAGCAATGCAGGCAACAACCAAGCCGTCGGTGGCGGCGCCACGGTTTATTCACACAACAACTTCGACTATACTTACAACGGTCGGCAACCGGAATATGGGCTTCTGCAGGATATTTTTCCAGCTCCATCGTCGTTTTTCAACCGACAGCCGTGA | 786 | 46.06 | MSDEMFKDLFYSGMDEYESIVRAFGITSDYSNINNEISGTTAMNSSCSLSSSDAGGGEEDDSVKEKEKQISKDVVEDNGGESSKAAGSGKSKKKGEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHNHLIPATLRGNLSAASGTFSPSMLTPMPVVGGVGFLPAELLSNAGNNQAVGGGATVYSHNNFDYTYNGRQPEYGLLQDIFPAPSSFFNRQP* | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 29962063 | 29964115 | + | CsaV3_6G051490.1 | Csa06g03763 | 535390 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03763 | 261 | MobiDBLite | consensus disorder prediction | 40 | 55 | - | - | |
Csa06g03763 | 261 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 29 | 252 | IPR044810 | GO:0003700 | |
Csa06g03763 | 261 | SUPERFAMILY | WRKY DNA-binding domain | 107 | 175 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g03763 | 261 | SMART | WRKY_cls | 115 | 174 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g03763 | 261 | MobiDBLite | consensus disorder prediction | 87 | 102 | - | - | |
Csa06g03763 | 261 | Pfam | WRKY DNA -binding domain | 116 | 172 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g03763 | 261 | MobiDBLite | consensus disorder prediction | 40 | 102 | - | - | |
Csa06g03763 | 261 | Gene3D | WRKY domain | 100 | 176 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g03763 | 261 | MobiDBLite | consensus disorder prediction | 57 | 79 | - | - | |
Csa06g03763 | 261 | ProSiteProfiles | WRKY domain profile. | 110 | 175 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g03763 | 261 | PANTHER | WRKY TRANSCRIPTION FACTOR 28-RELATED | 29 | 252 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g01184 | Csa-Chr6:10004976 | Csa06g03763 | Csa-Chr6:29962063 | 6.15E-43 | dispersed | |
Csa06g02060 | Csa-Chr6:18415484 | Csa06g03763 | Csa-Chr6:29962063 | 4.22E-40 | dispersed | |
Csa06g03763 | Csa-Chr6:29962063 | Csa06g01861 | Csa-Chr6:16783402 | 6.14E-45 | dispersed | |
Csa06g03763 | Csa-Chr6:29962063 | Csa07g01176 | Csa-Chr7:11502732 | 1.08E-60 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32209 | PF03106 | WRKY | 2.20E-25 | CL0274 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03763 | - | - | csv:101204102 | 476.478 |