Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03763 ATGTCGGATGAAATGTTTAAAGATTTATTTTATAGTGGGATGGATGAGTATGAGTCTATAGTGAGAGCTTTTGGAATAACATCGGATTATTCGAATATCAATAATGAAATTTCGGGGACGACTGCGATGAATTCTTCTTGTTCGTTGTCATCTTCGGATGCTGGAGGAGGCGAGGAGGATGATTCTGTGAAAGAGAAGGAGAAACAGATCAGTAAAGATGTTGTGGAAGATAACGGAGGGGAGAGTTCCAAGGCAGCTGGATCGGGTAAATCGAAGAAGAAAGGAGAGAAAAAAGAGAGAGAAGCGAGAGTCGCTTTCATGACCAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTCAAGAACAGTGCTTATCCCAGAAGCTATTACAGATGCACAACTCAAAAATGTGGAGTGAAAAAACGAGTAGAGAGATCCTACGAAGATCCGTCCATTGTAATTACAACCTATGAAGGTCAACACAACCACCTAATTCCGGCGACTTTAAGGGGGAACCTGTCGGCGGCGAGCGGGACATTTTCGCCGTCCATGCTGACGCCAATGCCAGTGGTCGGTGGCGTCGGGTTTCTGCCTGCAGAACTATTGAGCAATGCAGGCAACAACCAAGCCGTCGGTGGCGGCGCCACGGTTTATTCACACAACAACTTCGACTATACTTACAACGGTCGGCAACCGGAATATGGGCTTCTGCAGGATATTTTTCCAGCTCCATCGTCGTTTTTCAACCGACAGCCGTGA 786 46.06 MSDEMFKDLFYSGMDEYESIVRAFGITSDYSNINNEISGTTAMNSSCSLSSSDAGGGEEDDSVKEKEKQISKDVVEDNGGESSKAAGSGKSKKKGEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHNHLIPATLRGNLSAASGTFSPSMLTPMPVVGGVGFLPAELLSNAGNNQAVGGGATVYSHNNFDYTYNGRQPEYGLLQDIFPAPSSFFNRQP* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29962063 29964115 + CsaV3_6G051490.1 Csa06g03763 535390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03763 261 MobiDBLite consensus disorder prediction 40 55 - -
Csa06g03763 261 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 29 252 IPR044810 GO:0003700
Csa06g03763 261 SUPERFAMILY WRKY DNA-binding domain 107 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g03763 261 SMART WRKY_cls 115 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g03763 261 MobiDBLite consensus disorder prediction 87 102 - -
Csa06g03763 261 Pfam WRKY DNA -binding domain 116 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g03763 261 MobiDBLite consensus disorder prediction 40 102 - -
Csa06g03763 261 Gene3D WRKY domain 100 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g03763 261 MobiDBLite consensus disorder prediction 57 79 - -
Csa06g03763 261 ProSiteProfiles WRKY domain profile. 110 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g03763 261 PANTHER WRKY TRANSCRIPTION FACTOR 28-RELATED 29 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01184 Csa-Chr6:10004976 Csa06g03763 Csa-Chr6:29962063 6.15E-43 dispersed
Csa06g02060 Csa-Chr6:18415484 Csa06g03763 Csa-Chr6:29962063 4.22E-40 dispersed
Csa06g03763 Csa-Chr6:29962063 Csa06g01861 Csa-Chr6:16783402 6.14E-45 dispersed
Csa06g03763 Csa-Chr6:29962063 Csa07g01176 Csa-Chr7:11502732 1.08E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32209 PF03106 WRKY 2.20E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03763 - - csv:101204102 476.478