Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03767 ATGGCTGCCTCTGCAATGGCTCTTTCCTCCCCAACTCTGGCCGGCCAAGCCGTGAAACTCTCCCCCACTGCCCCTGAAATTCAGGGCAATGCAAAATTCACCATGAGGAAGACTGCCAGCAAGTCAGTTTCCTCCGGCAGCCCGTGGTATGGTCCTGACCGTGTCAAGTACTTGGGCCCATTCTCTGGTGAGCCACCATCCTACCTTACCGGAGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGACTTTCAGCTGATCCCGAGACCTTCGCCAAGAACCGTGAGTTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGGTGTGTCTTCCCTGAGCTTTTGTCTCGCAATGGTGTGAAGTTTGGTGAGGCTGTTTGGTTCAAGGCTGGATCTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGCAACCCCAGCTTGGTCCATGCTCAGAGCATTTTGGCCATCTGGGCTTGCCAGGTTGTGTTGATGGGTGCCGTCGAGGGTTACCGTATTGCTGGCGGCCCACTCGGAGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTTGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGTTGAAGAATGGAAGGTTGGCAATGTTTTCCATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCTTTGGAAAACTTGGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCATATGCCACAAACTTTGTTCCCGGAAAGTGA 798 53.76 MAASAMALSSPTLAGQAVKLSPTAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK* 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29986415 29987212 + CsaV3_6G051530.1 Csa06g03767 535394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03767 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Csa06g03767 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 265 - -
Csa06g03767 265 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Csa06g03767 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Csa06g03767 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02852 Csa-Chr3:27304318 Csa06g03767 Csa-Chr6:29986415 2.09E-171 dispersed
Csa06g01182 Csa-Chr6:9988814 Csa06g03767 Csa-Chr6:29986415 0 dispersed
Csa06g03767 Csa-Chr6:29986415 Csa07g00262 Csa-Chr7:2041428 1.26E-153 dispersed
Csa06g03766 Csa-Chr6:29983572 Csa06g03767 Csa-Chr6:29986415 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03767 K08912 - csv:101222687 543.888