Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03768 ATGGCTTCTTACGTTAGTTTAGCCATTTTCATGATGGCTAGTTTTGTTCTAGTCAGGGTTCTATATGCCCAACGCCAATCTGCCATGGAAGTTGAATTGGAAGCCTTAAAGGCTTTCAAAAGTTCCATCCATTTCGACCCATTGGGAGCACTTGCTGATTGGACGGACCTTAACGACCACTACTGCAATTGGTCTGGCATTATCTGTGATTCTGAATCCAAAAGGGTCGTTTCGATTACTTTGATTGATCAGCAGCTTGAAGGCAAGATTTCTCCATTTATTGGGAACCTCTCAGCTCTGCAGGTTCTTGATTTATCGGACAATTCGTTTTCCGGGCCGATTCCAGGTGAATTGGGTTTGTGTTCCAACCTTTCTCAGCTAACTCTTTACGGAAACTTTCTTTCAGGCCACATTCCACCCCAGTTGGGAAACCTTGGGTTCTTGCAATATGTTGATTTGGGTCATAACTTCTTAAAGGGAAGCATTCCTGATAGCATTTGCAATTGCACGAACTTGTTAGGATTCGGTGTGATATTTAATAATCTCACCGGCAGAATCCCATCAAACATAGGAAGCTTAGTCAATCTTCAAATTCTGGTTGCATATGTCAACAAGCTAGAAGGTTCCATTCCCCTCTCTATTGGCAAACTAGATGCACTGCAAAGTCTAGATCTTAGCCAGAACAACTTGTCTGGGAACATACCAGTGGAGATTGGGAATTTGTTGAATTTGGAATATCTCTTATTGTATGAGAATGCTTTGGTTGGGAAGATTCCGGAGGAGATGGGTAAATGTGAGAAGCTTCTTTCTTTGGAACTATACAACAATAAGTTCAGTGGTCCAATTCCTTCACAATTAGGCTCTCTGATTCATTTACAAACCTTGCGTCTATATAAAAATAGGTTAAACTCCACTATACCACAATCTCTCTTACAGTTGAAAGGTTTAACCCATTTGCTTCTATCAGAGAACGAGTTAAGTGGAACTATATCTTCTGATATTGAATCTCTGAGATCATTGCAGGTTTTGACCCTTCACTCAAATAGATTTTCCGGGATGATTCCTTCATCTTTGACAAACTTGTCTAACTTAACACATTTGTCTCTGAGCTACAATTTTTTCACTGGTGAGATTCCATCCACTTTAGGTTTGCTTTATAATCTGAAGAGATTGACATTGAGCAGCAATCTCTTAGTGGGTTCAATTCCGTCTAGTATTGCCAATTGTACCCAGCTTTCTATAATTGATCTTTCATCCAATAGGCTGACAGGGAAAATACCCCTGGGATTCGGGAAGTTTGAAAATCTTACTTCCCTCTTTCTTGGATCAAATAGGTTTTTTGGTGAAATCCCAGATGACTTATTTGATTGTTCATCTCTTGAGGTCATAGACCTAGCTCTAAACAATTTCACTGGATTGTTAAAATCCAATATTGGCAAGCTTTCCAATATTCGAGTTTTCAGAGCCGCATCAAATTCATTTTCTGGGGAGATTCCAGGGGACATTGGCAACTTAAGCAGACTCAACACTTTAATACTTGCAGAAAATAAATTTTCAGGTCAAATTCCTGGGGAGTTGTCTAAGCTCTCTCTTCTTCAAGCTCTTTCTTTGCATGACAATGCATTGGAAGGAAGGATTCCTGAAAAAATATTTGATCTGAAACAACTGGTTCATCTTCATTTGCAGAACAACAAGTTCACAGGTCCAATTCCAGATGCCATCTCAAAGCTAGAGTTTCTTTCCTATTTGGATCTCCATGGAAACATGTTTAACGGATCCGTACCTAAAAGTATGGGGAATCTTCATCGACTTGTGATGTTAGATTTGTCCCACAACCATCTATCTGGATCAATTCCTGGGGTTTTAATCTCAGGTATGAAAGATATGCAGCTATATATGAACTTGTCCTACAATTTCCTGGTAGGAGGTATTCCAGCTGAGCTTGGGTTGTTGCAAATGATTCAATCCATTGACTTCTCAAACAACAATCTCATTGGGACTATTCCAGTAACGATTGGAGGTTGTAGAAATTTGTTCTTCCTTGATTTGTCAGGAAATGATCTTTCTGGTAGGCTTCCAGGGAATGCTTTTACTGGAATGAAAATGCTCACTAACTTAAACCTTTCACGAAACATAATAGCTGGTGAAATCCCTGAAGAGTTGGCAAATCTGGAGCATTTGTACTATTTGGACCTCTCTCAAAACCAGTTCAATGGCAGAATCCCGCAAAAACTTTCATCATTGAAGTATGTTAACCTTTCCTTTAATCAATTAGAAGGTCCTGTTCCAGACACTGGAATATTTAAAAAAATAAATGCTTCTAGCTTGGAAGGAAATCCTGCTCTTTGTGGATCCAAGTCTTTACCGCCTTGTGGAAAGAAGGATTCGCGACTTCTAACAAAAAAGAACTTACTAATTCTCATAACCGTTGGGTCTATTCTTGTACTCTTGGCTATAATTTTCTTAATTCTAAAACGATACTGTAAGCTTGAGAAATCTAAAAGTATTGAGAATCCTGAACCATCAATGGATTCTGCATGTACCCTTAAGAGGTTTGATAAGAAGGGTATGGAGATCACAACAGAATACTTCGCCAATAAAAACATTCTAGGTTCCAGTACTTTAAGCACTGTCTACAAGGGTCAACTGGACAATGGACAGGTTGTAGCTGTAAAAAGATTGAATTTGCAATATTTTGCTGCAGAATCAGATGATTACTTCAATAGAGAAATCAAAATTCTTTGTCAACTTAGACATAGGAATTTGGTGAAAGTACTTGGGTATGCTTGGGAAAGTCAGAAGCTGAAGGCTATCGTTCTTGAATACATGGAAAATGGGAACTTGGATAGGATAATACATAACTCCGGAACAGATCAAATAAGTTGTCCATTGTCAAAGAGGGTTGATATTTGTGTTTCCATTGCTAGTGGGATGCAATACCTGCATCATGGATATGATTTCCCCATCATTCACTGCGACTTGAAACCTTCAAACATCCTTCTTGATGGAGACTGGGTAGCCCATGTGAGCGATTTTGGAACTGCCAGAGTGTTGGGGGTGCAAAACCAATACACAAGCAATATTTCCTCTTCAGCAGCTTTTGAAGGCACTATCGGTTATCTGGCTCCAGAGTTTGCATACATGGGGAAAGTGACAACAAAAGTAGATGTGTTCAGTTTTGGTGTAATACTGATGGAATTTCTGACAAAGAAAAGGCCGACTGCCACCATTGAAGCCCATGGACTCCCAATCAGCTTGCAGCAACTGGTAGAGAGAGCTCTAGCTAATGGAAAAGAGGAACTTAGACAAGTTTTGGATCCTGTGTTGGTCTTGAATGATTCGAAAGAGCAAACGAGGTTAGAAAAACTGCTCAAACTAGCACTAAGCTGTACCGACCAAAATCCTGAGAATAGACCTGACATGAATGGAGTTCTGTCCATCCTTCTGAAGCTGCAGAGGGATGAATTGTAG 3471 39.67 MASYVSLAIFMMASFVLVRVLYAQRQSAMEVELEALKAFKSSIHFDPLGALADWTDLNDHYCNWSGIICDSESKRVVSITLIDQQLEGKISPFIGNLSALQVLDLSDNSFSGPIPGELGLCSNLSQLTLYGNFLSGHIPPQLGNLGFLQYVDLGHNFLKGSIPDSICNCTNLLGFGVIFNNLTGRIPSNIGSLVNLQILVAYVNKLEGSIPLSIGKLDALQSLDLSQNNLSGNIPVEIGNLLNLEYLLLYENALVGKIPEEMGKCEKLLSLELYNNKFSGPIPSQLGSLIHLQTLRLYKNRLNSTIPQSLLQLKGLTHLLLSENELSGTISSDIESLRSLQVLTLHSNRFSGMIPSSLTNLSNLTHLSLSYNFFTGEIPSTLGLLYNLKRLTLSSNLLVGSIPSSIANCTQLSIIDLSSNRLTGKIPLGFGKFENLTSLFLGSNRFFGEIPDDLFDCSSLEVIDLALNNFTGLLKSNIGKLSNIRVFRAASNSFSGEIPGDIGNLSRLNTLILAENKFSGQIPGELSKLSLLQALSLHDNALEGRIPEKIFDLKQLVHLHLQNNKFTGPIPDAISKLEFLSYLDLHGNMFNGSVPKSMGNLHRLVMLDLSHNHLSGSIPGVLISGMKDMQLYMNLSYNFLVGGIPAELGLLQMIQSIDFSNNNLIGTIPVTIGGCRNLFFLDLSGNDLSGRLPGNAFTGMKMLTNLNLSRNIIAGEIPEELANLEHLYYLDLSQNQFNGRIPQKLSSLKYVNLSFNQLEGPVPDTGIFKKINASSLEGNPALCGSKSLPPCGKKDSRLLTKKNLLILITVGSILVLLAIIFLILKRYCKLEKSKSIENPEPSMDSACTLKRFDKKGMEITTEYFANKNILGSSTLSTVYKGQLDNGQVVAVKRLNLQYFAAESDDYFNREIKILCQLRHRNLVKVLGYAWESQKLKAIVLEYMENGNLDRIIHNSGTDQISCPLSKRVDICVSIASGMQYLHHGYDFPIIHCDLKPSNILLDGDWVAHVSDFGTARVLGVQNQYTSNISSSAAFEGTIGYLAPEFAYMGKVTTKVDVFSFGVILMEFLTKKRPTATIEAHGLPISLQQLVERALANGKEELRQVLDPVLVLNDSKEQTRLEKLLKLALSCTDQNPENRPDMNGVLSILLKLQRDEL* 1157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29987631 29991370 - CsaV3_6G051540.1 Csa06g03768 535395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03768 1156 Pfam Leucine rich repeat 555 614 IPR001611 GO:0005515
Csa06g03768 1156 Pfam Leucine rich repeat 338 398 IPR001611 GO:0005515
Csa06g03768 1156 SUPERFAMILY L domain-like 445 763 - -
Csa06g03768 1156 Pfam Leucine Rich Repeat 148 169 IPR001611 GO:0005515
Csa06g03768 1156 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Csa06g03768 1156 ProSitePatterns Serine/Threonine protein kinases active-site signature. 989 1001 IPR008271 GO:0004672|GO:0006468
Csa06g03768 1156 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 14 296 - -
Csa06g03768 1156 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 289 380 - -
Csa06g03768 1156 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2 367 1151 - -
Csa06g03768 1156 Gene3D Ribonuclease Inhibitor 182 282 IPR032675 -
Csa06g03768 1156 Gene3D Ribonuclease Inhibitor 283 378 IPR032675 -
Csa06g03768 1156 Gene3D Ribonuclease Inhibitor 379 472 IPR032675 -
Csa06g03768 1156 SUPERFAMILY Protein kinase-like (PK-like) 840 1148 IPR011009 -
Csa06g03768 1156 SMART LRR_typ_2 337 360 IPR003591 -
Csa06g03768 1156 SMART LRR_typ_2 361 384 IPR003591 -
Csa06g03768 1156 SMART LRR_typ_2 217 241 IPR003591 -
Csa06g03768 1156 SMART LRR_typ_2 675 699 IPR003591 -
Csa06g03768 1156 SMART LRR_typ_2 433 457 IPR003591 -
Csa06g03768 1156 SMART LRR_typ_2 601 625 IPR003591 -
Csa06g03768 1156 SMART LRR_typ_2 145 169 IPR003591 -
Csa06g03768 1156 SMART LRR_typ_2 529 553 IPR003591 -
Csa06g03768 1156 SMART LRR_typ_2 385 409 IPR003591 -
Csa06g03768 1156 SMART LRR_typ_2 97 121 IPR003591 -
Csa06g03768 1156 SMART LRR_typ_2 289 313 IPR003591 -
Csa06g03768 1156 SMART LRR_typ_2 724 748 IPR003591 -
Csa06g03768 1156 PRINTS Leucine-rich repeat signature 220 233 - -
Csa06g03768 1156 PRINTS Leucine-rich repeat signature 601 614 - -
Csa06g03768 1156 CDD STKc_IRAK 870 1151 - -
Csa06g03768 1156 ProSiteProfiles Protein kinase domain profile. 864 1156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03768 1156 Gene3D Transferase(Phosphotransferase) domain 1 943 1155 - -
Csa06g03768 1156 Gene3D Ribonuclease Inhibitor 28 181 IPR032675 -
Csa06g03768 1156 SUPERFAMILY L domain-like 31 324 - -
Csa06g03768 1156 Pfam Protein kinase domain 865 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03768 1156 Gene3D Ribonuclease Inhibitor 695 798 IPR032675 -
Csa06g03768 1156 Gene3D Ribonuclease Inhibitor 473 694 IPR032675 -
Csa06g03768 1156 SMART serkin_6 864 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03768 1156 Gene3D Phosphorylase Kinase; domain 1 834 942 - -
Csa06g03768 1156 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 289 380 - -
Csa06g03768 1156 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 14 296 - -
Csa06g03768 1156 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 367 1151 - -
Csa06g03768 1156 SUPERFAMILY L domain-like 306 472 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03348 Csa-Chr1:30062867 Csa06g03768 Csa-Chr6:29987631 1.54E-37 dispersed
Csa06g03298 Csa-Chr6:27643194 Csa06g03768 Csa-Chr6:29987631 4.18E-18 dispersed
Csa06g03305 Csa-Chr6:27687678 Csa06g03768 Csa-Chr6:29987631 3.06E-165 dispersed
Csa06g03768 Csa-Chr6:29987631 Csa01g02313 Csa-Chr1:20220984 2.38E-162 dispersed
Csa06g03768 Csa-Chr6:29987631 Csa02g00996 Csa-Chr2:9583496 1.55E-173 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78450 PF00069 Pkinase 1.80E-43 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03768 K13420 - csv:101215973 2217.19