Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03772 ATGGCGGGACTGAGAAAACTGGCGCGATTGAAACCCATAGTTAATGAAGCATTGGCCGGAACAATTTTTGTAGGGAAGTTATTCTGTGGCCTTCATGTCATCAACACTTACATCTGCACAGCCACTTTCACCTACGGTCCCAGCATGCTTCCTACTCTTAACCTAACTGGTGATTTCGTCTTGGCCGAGCGACTCTCCACTCGCTTTGGCAGAGTCGGTGTTGGAGACATTGTCCTCGTTAGATCTCCTGAGAATCCTCGTAAAGTAGTGGGTAAGCGCTTGATTGGAATGGAGGGTGATTCTGTTACCTATGTTGTAGACCCGAAGAACAGTGATTGGAGCGAAACTGTTGTGGTTCCTAAGGGGCATGTTTGGATAGAGGGAGATAATATCTATGATTCGAGAGATTCAAGAAATTTTGGGGCCGTTCCATACAGTCTTCTACAAGGGAAAATATTTTGGAGGATATGGCCACCAAAGAGTTTTGGACAGTTGGAGAAGAGAAAATCAAACGAGACAGTCTTATGA 528 45.27 MAGLRKLARLKPIVNEALAGTIFVGKLFCGLHVINTYICTATFTYGPSMLPTLNLTGDFVLAERLSTRFGRVGVGDIVLVRSPENPRKVVGKRLIGMEGDSVTYVVDPKNSDWSETVVVPKGHVWIEGDNIYDSRDSRNFGAVPYSLLQGKIFWRIWPPKSFGQLEKRKSNETVL* 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30002556 30005568 + CsaV3_6G051580.1 Csa06g03772 535399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03772 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Csa06g03772 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Csa06g03772 175 PRINTS Bacterial leader peptidase 1 (S26A) family signature 119 138 IPR000223 GO:0006508|GO:0008236|GO:0016020
Csa06g03772 175 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 4 168 - -
Csa06g03772 175 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 4 168 - -
Csa06g03772 175 CDD S26_SPase_I 42 152 IPR019533 GO:0004252|GO:0006465
Csa06g03772 175 Pfam Signal peptidase, peptidase S26 113 157 IPR019533 GO:0004252|GO:0006465
Csa06g03772 175 Pfam Signal peptidase, peptidase S26 32 104 IPR019533 GO:0004252|GO:0006465
Csa06g03772 175 Gene3D Umud Fragment, subunit A 33 171 - -
Csa06g03772 175 SUPERFAMILY LexA/Signal peptidase 36 165 IPR036286 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03081 Csa-Chr3:28951453 Csa06g03772 Csa-Chr6:30002556 3.38E-24 dispersed
Csa04g00794 Csa-Chr4:5561046 Csa06g03772 Csa-Chr6:30002556 6.25E-41 dispersed
Csa06g02127 Csa-Chr6:19007762 Csa06g03772 Csa-Chr6:30002556 3.31E-06 dispersed
Csa06g03772 Csa-Chr6:30002556 Csa07g01614 Csa-Chr7:16654140 5.24E-07 dispersed
Csa06g03772 Csa-Chr6:30002556 Csa04g02369 Csa-Chr4:24053319 9.59E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03772 K09647 - csv:101209167 358.992