Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03777 ATGGACGTTGGAGAAGAAATTAGGGCAGCTCACAAGCGAGATTTTTTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGAAGAGATCAAAGCCATGATTAATCATAAGCGACATCGCCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGACCTTGGTCCCAGGGTGCTTAGGCATCCCAGTGAGTACATTCAGCCATTCTGCGATGCAGTTACAGAAACTGCTCGCAGTATTGACCCAAAATACCTCAAGGAAGGAGAACAGGTTATGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGATCTTCTCTCTCAGTTCATTGGATCTATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTTCATTTCTGCCCCACAACTGGAGCTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACGGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAATATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCCGAGAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATGTCGTAGTTGAGGATGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTCTTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCAAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCGCCAATATACAGTCCTGAGGACTTGAAGAATATTAAAAAGATAGCTGAAAGAGATGACACATTTGATCTTCTTGGTAACTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAGAAAGCAGTGATACTGTTGATGCTTAGTGGGGTGGAGAAGAACTTGAAGAATGGCACTCACCTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCTAAGTCTCAGCTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCCTCTGGCGTTGGGTTAACTGCCGCTGTTACATCTGACCAGGAAACAGGAGAAAGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTTACCATTGCCAAAGCTGGTATTCATGCTTCACTAAACGCTCGGTGCAGCGTGGTAGCAGCTGCAAATCCCATATATGGATCGTATGATCGCTCGTTGACACCGACCAAGAATATTGGTCTTCCTGACTCTTTACTCTCTCGATTTGATCTACTATTTATTGTATTGGATCAAATGGATCCCGATATTGATCGCCATATTTCAGAGCATGTGTTGCGTATGCACCGTTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGATCAATGTATGGAAGAGAGGAAGAAGCTGAAGCTGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAGAAGATTGATCGTGGTCGGAAGCGTGATACTCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCTGACCTAACTGATGAGGCCTCTGAGCATATTGCAACAGCTTATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGTGGAACTCTTCCAATTACTGCCAGAACCTTGGAAACCATTATACGACTCTCAACTGCTCATGCAAAACTGAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTGGAAGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAGGGAGAAAGAATTGGAAAGAAAGCGCAGAGCTGAAGATGAAACAGTGGAAAATGACAGACCAGAACGAAGTACCAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAGATCGATGATCCTCCTGCTGAACCAGAACTTGATCTGTCTGCAGAAAGGACAGAAGCATTCAATTCTCTTTTTGGTCAGCATATGCGTGCAAACCACCTGGATGTTATATCTATTGCAGATATTGAGAACGTTGTTAATACTGCAGGAGATAATCGTTACACTGCGGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGATACCATGGTGCATATGATATCATGA 2322 43.07 MDVGEEIRAAHKRDFLEFLEQDVGKGIYMEEIKAMINHKRHRLIINISDLHSFRDLGPRVLRHPSEYIQPFCDAVTETARSIDPKYLKEGEQVMVGFEGPFVSRRVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGAFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDVVVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSMYGREEEAEADTSVFVKYNRMLHGKKIDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEHIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKELERKRRAEDETVENDRPERSTKRREEGSRTDTMEIDDPPAEPELDLSAERTEAFNSLFGQHMRANHLDVISIADIENVVNTAGDNRYTAAEIMLLLQRLQDDNRVMIADTMVHMIS* 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30028617 30034805 + CsaV3_6G051630.1 Csa06g03777 535404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03777 773 Gene3D - 135 189 - -
Csa06g03777 773 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03777 773 CDD MCM3 292 638 - -
Csa06g03777 773 Gene3D - 5 99 - -
Csa06g03777 773 PANTHER DNA HELICASE 3 765 - -
Csa06g03777 773 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 765 IPR031327 GO:0003677|GO:0005524|GO:0032508
Csa06g03777 773 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03777 773 Gene3D - 109 239 IPR012340 -
Csa06g03777 773 Pfam MCM N-terminal domain 12 89 IPR027925 -
Csa06g03777 773 MobiDBLite consensus disorder prediction 647 701 - -
Csa06g03777 773 Gene3D - 271 661 IPR027417 -
Csa06g03777 773 Pfam MCM OB domain 109 239 IPR033762 -
Csa06g03777 773 Coils Coil 641 668 - -
Csa06g03777 773 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Csa06g03777 773 SMART mcm 104 640 IPR031327 GO:0003677|GO:0005524|GO:0032508
Csa06g03777 773 Pfam MCM AAA-lid domain 553 636 IPR041562 -
Csa06g03777 773 MobiDBLite consensus disorder prediction 647 693 - -
Csa06g03777 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 652 IPR027417 -
Csa06g03777 773 SMART AAA_5 331 484 IPR003593 -
Csa06g03777 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03777 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03777 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03777 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03777 773 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03777 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Csa06g03777 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Csa06g03777 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Csa06g03777 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Csa06g03777 773 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 627 642 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Csa06g03777 773 SUPERFAMILY Nucleic acid-binding proteins 13 257 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03777 Csa-Chr6:30028617 Csa07g01905 Csa-Chr7:18948862 1.57E-112 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03777 K02541 - csv:101210889 1489.55