Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03781 ATGAATACCCTTTTGGCTTTTTTATCGCCGCTGCTTCCCTTTGCGGCTTCACTTGTGTTTCTGCTTCTCTTTCTCGAGCAGATCTCTTATTTGAAGAAGAAACGCTCTGTTCCTGGTCCTTCTCTTGTTCTCCCCTTCGTCGGCAACGCAATTCCTCTCGTTAGAAACCCTGCCCGTTTCTGGGAAATTCAGGCTTCTTTGGCTAAATCCTCCGGTGTTGGTTTCTCTGTCAACTACATCGCCGGTAACTTCATCGTCTTTATTCGCGATACTGAGCTCTCTCACAAGATTTTCGCCAATGTGCGTTCCGATGCTATGAATCTCGTCGGTCATCCCTTCGGGAAGAAGCTATTTGGTGAAGATAATCTGATTTATATGTTGGGACAAAAGCACAAGGATCTCCGCCGTCGAATCGCTCCTAATTTCACGCCTAAAGCGCTTTCAACATACACCGCGCTTCAACAGATCATCATTCTCAAACACTTGAAGCTTTGGGAGCAGAAATCGTCGGAATCCTCACCGAAGCCCATTCCCTTGAGGTATTTGGCTCGAGATCTTAACCTCGAAACCTCTCAGATGGTGTTCGTCGGGCCGTATTTAGCCGAAAAGGTTCGCGAAAAGTTCAGAGTCGATTACAACATCTTCAATGTCGGTCTCATGAAACTTCCAATCGATTTACCTGGAACAGGTTTCAGAAACGCGAAACTCGCCGTCGACCGGCTAGTGGAGGTTCTAGCGGACTGTGCAGAGAAGAGCAAGACGAAAATGAAGAAAGAAGAAGAGCCGACGTGTTTAATCGACTTTTGGATGCAGGACACCGTAAAAGAACTCGAAGCTGCGGCAGCAGCCGGCGAGCCAGAGCCCGTTCACACCAGTAACTTCGAACTCGGCTTGTACCTCTTCGATTTCCTCTTCGCCGCGCAAGACGCTTCCACTTCGTCGCTTCTATGGGCCGTAAGTCTCCTCGACTCACATCCCGAGGTGATCGACAAAGTTCGGGAAGAAGTCAAATCCATCTGGTCACCGGAATCAGATACACTGATCTCATCGGAGCAGCTTTTGGAAATGAAGTACACTCAGGCAGTGGCCCGTGAGGTGGTCCGTTACCGTGCTCCGGCAACGGTAGTGCCGCACGTAGCAGCGGCGGATTTCCCGTTGACAGATTCATACAGCATCCCAAAAGGTGCAATCGTTTTCCCATCTGCATACGAGTCGAGCTTCCAGGGTTTCGTAGAACCGGAGCGATTCGACCCGGAACGGTTCTCTGAAGAAAGGCAAGAAGACCGAATTTTCAAAAGGAACTTTCTGGCATTCGGTGCTGGGTCCCACCAGTGCGTTGGGCAACGGTACGCTCTAAACCAACTCGTTCTTTTCATCGCTATGTTTTGTACGTTGCTTGATTTCAAGAGGCACACTTCCGACGGCTGTGATGAAATCGCTTTCAATCCCACCATCTGCCCCAAAGATGACTGCATGCTCTCCATTTCCATGCGGTGCCCTCGATTTCCTAATCTCTCCACTTGA 1524 49.61 MNTLLAFLSPLLPFAASLVFLLLFLEQISYLKKKRSVPGPSLVLPFVGNAIPLVRNPARFWEIQASLAKSSGVGFSVNYIAGNFIVFIRDTELSHKIFANVRSDAMNLVGHPFGKKLFGEDNLIYMLGQKHKDLRRRIAPNFTPKALSTYTALQQIIILKHLKLWEQKSSESSPKPIPLRYLARDLNLETSQMVFVGPYLAEKVREKFRVDYNIFNVGLMKLPIDLPGTGFRNAKLAVDRLVEVLADCAEKSKTKMKKEEEPTCLIDFWMQDTVKELEAAAAAGEPEPVHTSNFELGLYLFDFLFAAQDASTSSLLWAVSLLDSHPEVIDKVREEVKSIWSPESDTLISSEQLLEMKYTQAVAREVVRYRAPATVVPHVAAADFPLTDSYSIPKGAIVFPSAYESSFQGFVEPERFDPERFSEERQEDRIFKRNFLAFGAGSHQCVGQRYALNQLVLFIAMFCTLLDFKRHTSDGCDEIAFNPTICPKDDCMLSISMRCPRFPNLST* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30048644 30051419 - CsaV3_6G051670.1 Csa06g03781 535408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03781 507 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03781 507 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03781 507 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03781 507 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03781 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 438 447 IPR017972 GO:0005506|GO:0016705
Csa06g03781 507 PANTHER CYTOCHROME P450 61 14 495 - -
Csa06g03781 507 Gene3D Cytochrome P450 28 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03781 507 Pfam Cytochrome P450 38 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03781 507 SUPERFAMILY Cytochrome P450 30 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03781 507 PANTHER CYTOCHROME P450 26 14 495 - -
Csa06g03781 507 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03781 507 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03781 507 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g03781 507 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03781 Csa-Chr6:30048644 Csa06g00652 Csa-Chr6:5421216 3.80E-28 dispersed
Csa06g03781 Csa-Chr6:30048644 Csa03g01017 Csa-Chr3:8181393 6.42E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03781 K09832 - csv:101221194 961.444