Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03811 ATGGCTTCCAGGTCCAGCGGTCATAGCAAAACGCGGGTCGGGAGATACGAGCTGGGACGAACCCTTGGAGAGGGCAGCTTCGCCAAGGTTAAGTTTGCTCGTAACTGCGAGACAGGGGAGAACGTAGCCATCAAAATCCTGGACAAAGAGCGCATTCTCAAACACAAGATGATCGGGCAGATTAAACGTGAAATATCCACTATGAAACTCATTAGACATCCAAATGTCATTCGCATGTATGAGGTGATGGCTAGCAAGACCAAGATATATATTGTCTTGGAATTTGTAACGGGTGGAGAACTGTTTGACAAAATTTCATGTAAGGGGAGACTGAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAGTTAATAAATGCAGTGGATTATTGTCATAGCAGAGGTGTTTGTCATCGAGACCTAAAGCCAGAGAATTTATTACTGGATGCTAGTGGTGTTCTAAAGGTTTCAGATTTTGGATTGAGTGCTCTACCGCAACAAGTTCGAGGCGATGGATTACTTCACACTACTTGTGGAACACCCAATTATGTTGCTCCAGAGGTTATCGACAATAAAGGGTACTTTGGAGCAAAGGCTGACCTATGGTCATGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTACTTGCCATTTGAAGAATCCAATCTCATGCAACTGTATAAAAAGATATTCAAGGCGGACTTCACATGTCCTCCATGGTTCTCCTCTAGTGCCAAGAAATTAATCAAGAGGATCCTGGATCCGAATCCATTAACTAGAATTACTATTGCTGAAGTCCTTGAGAATGATTGGTTTAAGAAAGGATACAAGGCACCCAGTTTCAAAAATGACGAAATCAGTCTTGATAACATTGATGACATCTTTAATGAATCAGAGGCTACTGATAGCCTTGTTGTTGAGCGGAGAGAAGATAGATCTGCATCACTTGCGTCACCTGTCACCATGAATGCATTTGAGCTCATCTCTAAATCTCGGGGCCTCAACCTTGCCACACTCTTTGAGAAGCAAATGGGCATAATTAAACGTGAAACAAGATTCACATCCAATTGTCCAGCAGATGAAATCATTTCGAAGATAAAAAACACTGCTGTTCCTTTGGGTTTTGATGTGAAGATTAATAACTTCAAGATGAAGCTCCAAGGCGAAAAAACTGGACGCAAAGGTCATTTATCGGTCGCAACAGAGATTTTTCAGGTTGCTCCTTCGCTGCATATGGTGGAGCTTCGCAAAGCTGGAGGCGACACTTTAGAATTTCAAATGTTCTATAATAACCTCTCAACGGGACTGAAAGATATTGTATGGAAATACGGAGACGAGGTGGAGCAGGAAAGTAAGGGTACAAATTGA 1365 42.34 MASRSSGHSKTRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILDKERILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKISCKGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKVSDFGLSALPQQVRGDGLLHTTCGTPNYVAPEVIDNKGYFGAKADLWSCGVILFVLMAGYLPFEESNLMQLYKKIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITIAEVLENDWFKKGYKAPSFKNDEISLDNIDDIFNESEATDSLVVERREDRSASLASPVTMNAFELISKSRGLNLATLFEKQMGIIKRETRFTSNCPADEIISKIKNTAVPLGFDVKINNFKMKLQGEKTGRKGHLSVATEIFQVAPSLHMVELRKAGGDTLEFQMFYNNLSTGLKDIVWKYGDEVEQESKGTN* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30243812 30249213 + CsaV3_6G051970.1 Csa06g03811 535438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03811 454 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Csa06g03811 454 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524
Csa06g03811 454 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03811 454 CDD STKc_SnRK3 15 270 - -
Csa06g03811 454 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 446 - -
Csa06g03811 454 CDD CIPK_C 322 437 - -
Csa06g03811 454 SUPERFAMILY Protein kinase-like (PK-like) 13 279 IPR011009 -
Csa06g03811 454 Gene3D Kinase associated domain 1, KA1 316 441 - -
Csa06g03811 454 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03811 454 Gene3D Transferase(Phosphotransferase) domain 1 96 279 - -
Csa06g03811 454 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Csa06g03811 454 Pfam NAF domain 318 377 IPR004041 GO:0007165
Csa06g03811 454 PANTHER SERINE/THREONINE KINASE 9 446 - -
Csa06g03811 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Csa06g03811 454 SMART serkin_6 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02575 Csa06g03811 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02575 Csa-Chr1:22662732 Csa06g03811 Csa-Chr6:30243812 0 dispersed
Csa03g00767 Csa-Chr3:6741087 Csa06g03811 Csa-Chr6:30243812 0 dispersed
Csa04g01217 Csa-Chr4:10801059 Csa06g03811 Csa-Chr6:30243812 0 dispersed
Csa06g03710 Csa-Chr6:29666281 Csa06g03811 Csa-Chr6:30243812 1.30E-164 dispersed
Csa06g03811 Csa-Chr6:30243812 Csa01g02318 Csa-Chr1:20282952 5.02E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78451 PF00069 Pkinase 3.90E-75 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03811 - - csv:101214052 907.901