Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03820 ATGATCCACTCTCTCTGGGAGAGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCTGGCCCACTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCATAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTTGATGCCCATATACCAAGTTATCCAAGCTTGCCACCACAGCTAATCTGCCAGCTTCACAATGTTACAATGCATGCAGATATTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAACTATTTTTGTAAAACATTGACAGCAAGTGACACTAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCAGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAGCAGCCTCCTGCACAGGAGTTAATTGCAAGGGATCTGCATGATAATGAGTGGAAATTTAGGCATATCTTTCGTGGCCAACCGAAAAGGCATCTCCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCGGTTATCTTTATTTGGAATGAAAAGAATCAATTACTGTTGGGGATCCGTCGAGCTAATCGACCACAAACAGTGATGCCCTCGTCGGTTCTGTCCAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCAAGGGCTAGCCCATCAGAGTTCATCATACCTCTGGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCTGTTGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGTGTTCGTCGTTACATGGGCACTATTACTGGTATCAGTGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGCCCCTGGCCAACTGGATTTCCCTCTTTCCATGGTCTTAAAGAGGACGATCTGGGATTAAATTCTCAACTAATGTGGCTTCGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAACTTCCCTGGAATTGGAGTTGCACCATGGATGCAGCCAAGGCTTGATGCTTCTATGGTCGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACCGTAGATCCTGCTAAGGCGCAGGCTGCTTCGCTTCTTCAATTCCAACAAACTCAAAATCTTCCCAACAGGCCTGCTAATTTCATGCCACCTCAGATGTTGCAGCAGCCTCAGCCTCAGCCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGCTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCACCCCCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAGCAACAGCAACCACAACAGCAAGTGTTTGATCACCATCAAATTCCAAGTCCCATGTCTACAATGTCTCAGTTCAGTTCTGCTTCCCAATCCCAAGCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAACAGAGTTTTTCTGATTCAAATCCCAACCATGTGACAAGTCCCATCATTTCACCCTTGCACAGCCTATTAGGTGGTTCATTTTCACAAGATGAATCATCTCAGATGCTTAACCTTCCTCGAACCAATCCCATGATACATTCATCTACATGGCCGTCAAAGCGAGCTGCAATCGATCCTCTTCTCTCTTCAGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAATATAGGGACAACTCCGGCTAATATCTCTCAGAATGCTTTTTCATTGCCGCCTTTTCCTGGGAGAGAGTGTTCATTAGATCAAGGGAATGTCGATCCGCAGAGTAATCTTCTGTTTGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCTTCGAATTATGTGAATACTGCTGGTACCAACTTCTCTGCCAATCCAACTGGGACAGGGACACCTTCCAATTGCAATGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACTGGCCAAGTAAACCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTTGCTCACATGTTCGGCCTTGAAGGCGAATTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAGTTTGTCAACAGCGTGTGGTGTATCAAAATACTATCACCACAGGAAGTGCAGGACATGGGCAAACGTGGCCTAGAGCTCTTGAACTCTGTCCCGATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAACAGACAGGAGTCATCCAGAAATATGAATTCTGGGATTACTTCTGTCGGGTCTCTTGAGTACTGA 2724 46.84 MIHSLWERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPANFMPPQMLQQPQPQPQPPQTFLQGDENQHLSHSQAQSQPTAVLQQEIKHQTFNNHPQQQQQQQQQQQQQQQQPQQQVFDHHQIPSPMSTMSQFSSASQSQAQSLQTIPPLCRQQSFSDSNPNHVTSPIISPLHSLLGGSFSQDESSQMLNLPRTNPMIHSSTWPSKRAAIDPLLSSGNSQFVLSQGENIGTTPANISQNAFSLPPFPGRECSLDQGNVDPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGTNFSANPTGTGTPSNCNEDSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQDMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNMNSGITSVGSLEY* 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30293446 30298616 - CsaV3_6G052060.1 Csa06g03820 535447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03820 907 MobiDBLite consensus disorder prediction 488 574 - -
Csa06g03820 907 CDD B3_DNA 117 218 IPR003340 GO:0003677
Csa06g03820 907 ProSiteProfiles PB1 domain profile. 773 857 IPR000270 GO:0005515
Csa06g03820 907 SUPERFAMILY CAD & PB1 domains 765 848 - -
Csa06g03820 907 SMART B3_2 118 220 IPR003340 GO:0003677
Csa06g03820 907 MobiDBLite consensus disorder prediction 885 907 - -
Csa06g03820 907 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Csa06g03820 907 Gene3D - 282 354 - -
Csa06g03820 907 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Csa06g03820 907 PANTHER AUXIN RESPONSE FACTOR 6 7 885 - -
Csa06g03820 907 Pfam AUX/IAA family 762 862 IPR033389 -
Csa06g03820 907 Gene3D - 116 219 IPR015300 -
Csa06g03820 907 Gene3D - 770 862 - -
Csa06g03820 907 Pfam Auxin response factor 244 327 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa06g03820 907 MobiDBLite consensus disorder prediction 464 574 - -
Csa06g03820 907 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 885 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa06g03820 907 SUPERFAMILY DNA-binding pseudobarrel domain 103 247 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02582 Csa06g03820 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02582 Csa-Chr1:22768203 Csa06g03820 Csa-Chr6:30293446 0 dispersed
Csa06g03820 Csa-Chr6:30293446 Csa05g01402 Csa-Chr5:15021321 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32214 PF02309 AUX_IAA 2.10E-07 CL0072 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03820 - - csv:101210406 1722.21