Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03845 ATGAACAAATTGTTAATGGAGGAGAATGACCGTTTACAGAAACAGGTGTCCCATTTGGTCTATGAGAATGGCTTTATGCGCCAGCAACTGCATAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCTCAACAACAGCAAAACCCAAATCCTCAGCATCCTAATAGGGATGTTAACAACCCAGCTGGTCTTCTCGCGGTAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAATTGCAGTGGGGTAGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCGACAAAGGTTGCAGAAATTCTCAAAGATCGCCTTTCATGGTATCGTGACTGCCGCTGTCTTAATGTTTTAAGTGTAATTCCTACTGGAAATGGAGGAACAATAGAGCTCATATATATGCAGACTTATGCTCCAACGACATTAGCAGCAGCACGTGACTTCTGGACGATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTTTGTGAGAGGTCATTATCTTCTTCAAGTGGCGGCCCTGCAGGGCCTCCGCCATCTACTTTTGTAAGAGCTGAGATGCTTCCTAGTGGCTATTTAATACGAGCGTGCGAGGGGGGTGGATCAATTATTCACATTGTCGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTATGAGTCATCCAAGATCCTTGCTCAGAAAATAACAATCGCTGCATTGCGTCACATTAGACAAATTGCTCAAGAGACTAACGGAGAAATTCAATGTACTGGCGGACGTCAACCTGCTGTACTGCGGACGTTTAGTCAAAAACTCTGCAGGGGTTTCAATGATGCTGTCAATGGGTTTGCTGATGATGGCTGGTCACCTATGGGAAGTGATGGTGTGGAGGATGTGACAATTCTTATAAACACATCAGCAAACAAGTTTTCTGGATCCCAGTATAACACATCCTTGTATCCCTCTTTTGGTGGAGGAGTTATGTGTGCAAAGGCGTCAATGTTACTTCAGAATGTTCCCCCTGCTTTGCTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCCTACTCTGCTGCAAGTTTAAAAGCCAGTCCGTATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAGGTTATTTTGCCTCTTGCTACTACTGTGGAGCATGAGGAGTTTTTGGAGGTGGTTCGGCTGGAGGGCCTTGCATTCTCTCCTGAAGATGTTGCTTTGGCTGGACGAGATATGTACTTACTGCAGCTCTGCAGTGGGGTTGATGAGAATGCAGTTGGAGCTTGCGCTCAGCTTGTGTTTGCACCTATAGATGAATCTTTTGCTGATGATGCTCCACTACTTCCTTCGGGGTTCCGTGTCATACCGCTGGATCCAAAAACGGATGAACCTACTGCTGCTAGAACATTGGATTTAGCCTCTACCCTTGAAGTTGGTGCCAATGCTGCACGTTCTGCTGGTGAAACTGATTTGAGCAACTATAACCTTCGTGTTGTGGGCTCTGTTCAGAGGGTTGCCATGGCCATTTCCCCATCGCGGTTGAGTTCCAATATGGGACTAAAGCCTCTTCCTGGTTCACCTGAAGCTCTCACTTTGGCTCGATGGATTTGCCGAAGCTACAGGGTCCATGTTGGAGCTGAGCTCCTTCAAGCTGATTCCCAGTCTGGAGATGCCATGTTGAAGCAGCTCTGGCACCACTCCGATGCAATCATGTGTTGCTCCGTTAAAACCAACGCATCTGCTGTGTTCACCTTTGCTAACCAGGCTGGTCTGGATATGCTTGAAACCACTCTTGTTGGCCTACAAGATATAATGCTAGACAAAATTCTTGATGAGGCAGGTCGGAAGATTCTCTGCTCTGAATTCCCCAAAATAATGCAGCAGGGGTTTGCAAATCTTCCCTCTGGCATCTGCGTATCCAGTATGGGTCGTCCCATTTCTTATGAGCAAGCGGTTGCCTGGAAGGTTTTAAATGATGATGATTCCAATCACTGTCTTGCTTTCATGTTCATAAACTGGTCCTTTGTTTGA 2181 47.18 MNKLLMEENDRLQKQVSHLVYENGFMRQQLHSASGTTTDNSCESVVMSGQPQQQQNPNPQHPNRDVNNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLSSSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKITIAALRHIRQIAQETNGEIQCTGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGVEDVTILINTSANKFSGSQYNTSLYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLATTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTAARTLDLASTLEVGANAARSAGETDLSNYNLRVVGSVQRVAMAISPSRLSSNMGLKPLPGSPEALTLARWICRSYRVHVGAELLQADSQSGDAMLKQLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFANLPSGICVSSMGRPISYEQAVAWKVLNDDDSNHCLAFMFINWSFV* 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30511732 30516551 - CsaV3_6G052310.1 Csa06g03845 535472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03845 726 MobiDBLite consensus disorder prediction 31 65 - -
Csa06g03845 726 ProSiteProfiles START domain profile. 65 293 IPR002913 GO:0008289
Csa06g03845 726 CDD START_ArGLABRA2_like 69 285 - -
Csa06g03845 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX32 544 726 - -
Csa06g03845 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX32 1 549 - -
Csa06g03845 726 SMART START_1 74 284 IPR002913 GO:0008289
Csa06g03845 726 MobiDBLite consensus disorder prediction 31 68 - -
Csa06g03845 726 Pfam MEKHLA domain 581 725 IPR013978 -
Csa06g03845 726 Pfam START domain 75 282 IPR002913 GO:0008289
Csa06g03845 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 544 726 IPR044830 GO:0003700
Csa06g03845 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 549 IPR044830 GO:0003700
Csa06g03845 726 Gene3D - 108 292 IPR023393 -
Csa06g03845 726 SUPERFAMILY Bet v1-like 75 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03845 Csa-Chr6:30511732 Csa07g02448 Csa-Chr7:22354861 0 dispersed
Csa01g02627 Csa-Chr1:23252566 Csa06g03845 Csa-Chr6:30511732 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03845 K09338 - csv:101210154 1412.51