Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03846 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCCGATGAGCAGCGAAAGTACTCTGAATCTCAGAATCATTCTTCATCGGTCATAAATGGACTAAATCAATCAACCCCAAATCAGTATGTAGCGTCTCCCCAAGTTGGAGCAGGACATTCTATGGTACCCCCGGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGGATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGCAGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATCTACACGCATTGAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAAAATCATCAAAATGAGGTGGCATCAGGTGATAAATCACAGCCAAATATAAATCTGAATTCTGATAGAAGTGATCTTGCTTCTTCAGAGAACTGA 609 42.53 MTSSVHDYSDNGEADEQRKYSESQNHSSSVINGLNQSTPNQYVASPQVGAGHSMVPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSEN* 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30524534 30535503 - CsaV3_6G052320.1 Csa06g03846 535473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03846 202 MobiDBLite consensus disorder prediction 1 51 - -
Csa06g03846 202 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Csa06g03846 202 MobiDBLite consensus disorder prediction 23 47 - -
Csa06g03846 202 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Csa06g03846 202 Gene3D - 108 169 - -
Csa06g03846 202 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Csa06g03846 202 MobiDBLite consensus disorder prediction 163 202 - -
Csa06g03846 202 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Csa06g03846 202 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 183 IPR001289 GO:0003700|GO:0006355
Csa06g03846 202 MobiDBLite consensus disorder prediction 168 202 - -
Csa06g03846 202 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Csa06g03846 202 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Csa06g03846 202 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03846 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101205549 392.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01062 Csa-Chr4:8513729 Csa06g03846 Csa-Chr6:30524534 5.67E-34 dispersed
Csa06g03846 Csa-Chr6:30524534 Csa07g02013 Csa-Chr7:19647054 1.08E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g03164 . 1 235 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.0 2.8e-51 199.1
Csa06g02549 . 105 342 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.7 5.5e-48 188.3
Csa01g03164 . 1 235 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.5 5.1e-46 181.8
Csa06g03846 . 1 200 CCAAT-HAP2 Transcription Factor Family AT1G30500 51.9 2.2e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32216 PF02045 CBFB_NFYA 4.10E-26 No_clan Csa TF