Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03849 ATGAATAATCGTGCAATGGAACTTGGGAGGCCTGGCTCAGGTGGTATCCTTACTGAATTCGAGAATCAAACTATATATGAACCGATTAAACTATCTTCTGCAAATGCATATATTGTATCTATTGTGGCCTTGAAAATAACGTTAGGCCTTTTCTGGTCATGTTCAGGCAAAAGAAGATTAAAGGATCTATTGCTTTTAAAGGATAATCGCTTTTGTGCAGATTGTCGCGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGCGTTCATCGAAGCCTCGGTTCACATATATCTAAGGTGTTATCAGTGACTCTGGATGAATGGAATGATGATGAAATTGATGCAATGATAGAAGTTGGAGGAAATTCTTCTGCAAATGCTATTTATGAAGCCTTTCTTCCTGAGGGATTTTCAAAACCTGGACCTGATGCCACCCACGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCGTCCAACTCAGACAAAAGCAACATCCAAGCAAGCTTTTCTTCAAAGATCATGAACAGTTTTCGTTCTAATTCTTCACAAAAATCACAATCACAGCAAGGTATGGTAGAGTATATTGGATTATTGAAGGTCAAAGTGATTAAAGGGACAAACTTAGCTATCAGAGATATGATGTCGAGCGATCCTTATGTAGTCATGACTCTCGGTAAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAACGAGGAACTAACACTATCTGTACCTCAAGGTTTTGGATCTATAAAGTTGGAAGTATACGACTATGACACATTTTCAGCCGACGACATAATGGGAGAAGCAGAGATTGATCTCCAACCCTTGATAACATCCGCAATGGCATTTGGAGATGCTGGAATGTTCTCAAACATGCAAATTGGTAAATGGCTGAAATCGCACGACAATGCTCTCATTAACGATAGCACCGTTAATATTGTTGATGGAAAGGTGAAACAAGAGATAGCTCTCAAGCTTCAAAATGTGGAATCGGGCGAACTAGATCTAGAGCTAGAATGGATGGCTCTTGAACAATAG 1128 39.45 MNNRAMELGRPGSGGILTEFENQTIYEPIKLSSANAYIVSIVALKITLGLFWSCSGKRRLKDLLLLKDNRFCADCRAADPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEVGGNSSANAIYEAFLPEGFSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSSNSDKSNIQASFSSKIMNSFRSNSSQKSQSQQGMVEYIGLLKVKVIKGTNLAIRDMMSSDPYVVMTLGKQTVQTSVVRSNLNPVWNEELTLSVPQGFGSIKLEVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALINDSTVNIVDGKVKQEIALKLQNVESGELDLELEWMALEQ* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30542624 30545705 + CsaV3_6G052350.1 Csa06g03849 535476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03849 375 ProSiteProfiles C2 domain profile. 201 316 IPR000008 -
Csa06g03849 375 CDD ArfGap 69 166 - -
Csa06g03849 375 CDD C2_ArfGAP 218 362 - -
Csa06g03849 375 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 53 375 IPR044518 GO:0005096|GO:0005543
Csa06g03849 375 Pfam Putative GTPase activating protein for Arf 58 173 IPR001164 GO:0005096
Csa06g03849 375 SUPERFAMILY ArfGap/RecO-like zinc finger 57 174 IPR037278 -
Csa06g03849 375 ProSiteProfiles ARF GTPase-activating proteins domain profile. 57 185 IPR001164 GO:0005096
Csa06g03849 375 Gene3D Arf GTPase activating protein 53 177 IPR038508 -
Csa06g03849 375 Pfam C2 domain 220 309 IPR000008 -
Csa06g03849 375 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 219 363 IPR035892 -
Csa06g03849 375 SMART arf_gap_3 57 179 IPR001164 GO:0005096
Csa06g03849 375 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 53 375 - -
Csa06g03849 375 PRINTS HIV Rev interacting protein signature 88 105 IPR001164 GO:0005096
Csa06g03849 375 PRINTS HIV Rev interacting protein signature 109 130 IPR001164 GO:0005096
Csa06g03849 375 PRINTS HIV Rev interacting protein signature 69 88 IPR001164 GO:0005096
Csa06g03849 375 SMART C2_3c 220 315 IPR000008 -
Csa06g03849 375 Gene3D C2 domain 216 374 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04131 Csa-Chr3:36230661 Csa06g03849 Csa-Chr6:30542624 9.32E-26 dispersed
Csa05g02017 Csa-Chr5:23557147 Csa06g03849 Csa-Chr6:30542624 1.44E-38 dispersed
Csa05g02849 Csa-Chr5:28851628 Csa06g03849 Csa-Chr6:30542624 5.50E-109 dispersed
Csa06g03438 Csa-Chr6:28333207 Csa06g03849 Csa-Chr6:30542624 7.55E-39 dispersed
Csa05g01664 Csa-Chr5:19769497 Csa06g03849 Csa-Chr6:30542624 2.97E-104 transposed
Csa01g00743 Csa-Chr1:4728771 Csa06g03849 Csa-Chr6:30542624 3.67E-27 transposed
Csa01g02626 Csa-Chr1:23243264 Csa06g03849 Csa-Chr6:30542624 4.44E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03849 K12486 - csv:101218116 620.542