Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03854 ATGAACAACGAAGATGATGAACGAGATGGGGATGTGGAAGATGAGGGAGGCATTGCGCAAATAAGACGACGAGAGGTTACTTATGGATCTCATCTAGTACAGGGCAAAATGAATCATGGAATGGAGGACTATATCGTTACTGAGGATCGACTTGTTGACGACCATAAGCTAGGACTATTTGCAATATTTGATGGCCATTCAGGTCGCGATGTCGCAGAGTACTTGCAGAGCCATCTGTTTGATAACATCTTAAGCCAGTCTGATTTTTGGGAAGACCCTGATGGAGCAATCAGGAGGGCATATAAGGAAACAGATGAAGAGATTTTGGCTAAAAGGGTGAGAACGAGAGGAGGTTCAACAGCAGTCACTGCTATACTAATCGATGGGCAGACTCTAATTGTCGCTCACGTAGGCGACTCACGGGCGGTGATGTGCAGGAATGGTTCGGCAAAACCGATTACGGTTGATCACGATCCAGAGAAGGAGAAGGAGCTTGTTGAGAGCCGAGGTGGATTTGTTGTACGAATGCCAGGAAATGTGCCAAGGGTGGATGGTCAGCTAGCAATGTCAAGGGCATTTGGTGATGCTAAGCTTAAAGAACACATTACTTCAGAACCAGATATCAGGATCGTCGCTATTGAAAATGAGACTGAGTTCGTCATTTTAGCCAGTGATGGCCTCTGGAAGGTAATATCAAACCAGGAAGCTTGTGATTGTATCAGAAAAATGGCTATGGATCCTCAAAAGGCTTCAGAGAAGTTGATCAAAGAGGCATTGTCTAAGATGAGCTACGATGACATTTCCTGCATTGTTATTACCTTCCACTGA 828 44.93 MNNEDDERDGDVEDEGGIAQIRRREVTYGSHLVQGKMNHGMEDYIVTEDRLVDDHKLGLFAIFDGHSGRDVAEYLQSHLFDNILSQSDFWEDPDGAIRRAYKETDEEILAKRVRTRGGSTAVTAILIDGQTLIVAHVGDSRAVMCRNGSAKPITVDHDPEKEKELVESRGGFVVRMPGNVPRVDGQLAMSRAFGDAKLKEHITSEPDIRIVAIENETEFVILASDGLWKVISNQEACDCIRKMAMDPQKASEKLIKEALSKMSYDDISCIVITFH* 276
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 30575645 30581128 - CsaV3_6G052400.1 Csa06g03854 535481
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03854 275 CDD PP2Cc 28 274 IPR001932 -
Csa06g03854 275 Pfam Protein phosphatase 2C 37 266 IPR001932 -
Csa06g03854 275 Gene3D - 13 275 IPR036457 -
Csa06g03854 275 PANTHER PROTEIN PHOSPHATASE 2C 28-RELATED 20 275 - -
Csa06g03854 275 SUPERFAMILY PP2C-like 26 275 IPR036457 -
Csa06g03854 275 SMART PP2C_SIG_2 42 274 IPR001932 -
Csa06g03854 275 PANTHER ALPHABET, ISOFORM E-RELATED 20 275 - -
Csa06g03854 275 ProSiteProfiles PPM-type phosphatase domain profile. 27 274 IPR001932 -
Csa06g03854 275 SMART PP2C_4 23 272 IPR001932 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03854 Csa-Chr6:30575645 Csa07g00485 Csa-Chr7:3515190 9.80E-110 dispersed
Csa06g03854 Csa-Chr6:30575645 Csa03g02203 Csa-Chr3:19119262 6.25E-54 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03854 - - csv:101211141 537.339