Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03854 | ATGAACAACGAAGATGATGAACGAGATGGGGATGTGGAAGATGAGGGAGGCATTGCGCAAATAAGACGACGAGAGGTTACTTATGGATCTCATCTAGTACAGGGCAAAATGAATCATGGAATGGAGGACTATATCGTTACTGAGGATCGACTTGTTGACGACCATAAGCTAGGACTATTTGCAATATTTGATGGCCATTCAGGTCGCGATGTCGCAGAGTACTTGCAGAGCCATCTGTTTGATAACATCTTAAGCCAGTCTGATTTTTGGGAAGACCCTGATGGAGCAATCAGGAGGGCATATAAGGAAACAGATGAAGAGATTTTGGCTAAAAGGGTGAGAACGAGAGGAGGTTCAACAGCAGTCACTGCTATACTAATCGATGGGCAGACTCTAATTGTCGCTCACGTAGGCGACTCACGGGCGGTGATGTGCAGGAATGGTTCGGCAAAACCGATTACGGTTGATCACGATCCAGAGAAGGAGAAGGAGCTTGTTGAGAGCCGAGGTGGATTTGTTGTACGAATGCCAGGAAATGTGCCAAGGGTGGATGGTCAGCTAGCAATGTCAAGGGCATTTGGTGATGCTAAGCTTAAAGAACACATTACTTCAGAACCAGATATCAGGATCGTCGCTATTGAAAATGAGACTGAGTTCGTCATTTTAGCCAGTGATGGCCTCTGGAAGGTAATATCAAACCAGGAAGCTTGTGATTGTATCAGAAAAATGGCTATGGATCCTCAAAAGGCTTCAGAGAAGTTGATCAAAGAGGCATTGTCTAAGATGAGCTACGATGACATTTCCTGCATTGTTATTACCTTCCACTGA | 828 | 44.93 | MNNEDDERDGDVEDEGGIAQIRRREVTYGSHLVQGKMNHGMEDYIVTEDRLVDDHKLGLFAIFDGHSGRDVAEYLQSHLFDNILSQSDFWEDPDGAIRRAYKETDEEILAKRVRTRGGSTAVTAILIDGQTLIVAHVGDSRAVMCRNGSAKPITVDHDPEKEKELVESRGGFVVRMPGNVPRVDGQLAMSRAFGDAKLKEHITSEPDIRIVAIENETEFVILASDGLWKVISNQEACDCIRKMAMDPQKASEKLIKEALSKMSYDDISCIVITFH* | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 30575645 | 30581128 | - | CsaV3_6G052400.1 | Csa06g03854 | 535481 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03854 | 275 | CDD | PP2Cc | 28 | 274 | IPR001932 | - | |
Csa06g03854 | 275 | Pfam | Protein phosphatase 2C | 37 | 266 | IPR001932 | - | |
Csa06g03854 | 275 | Gene3D | - | 13 | 275 | IPR036457 | - | |
Csa06g03854 | 275 | PANTHER | PROTEIN PHOSPHATASE 2C 28-RELATED | 20 | 275 | - | - | |
Csa06g03854 | 275 | SUPERFAMILY | PP2C-like | 26 | 275 | IPR036457 | - | |
Csa06g03854 | 275 | SMART | PP2C_SIG_2 | 42 | 274 | IPR001932 | - | |
Csa06g03854 | 275 | PANTHER | ALPHABET, ISOFORM E-RELATED | 20 | 275 | - | - | |
Csa06g03854 | 275 | ProSiteProfiles | PPM-type phosphatase domain profile. | 27 | 274 | IPR001932 | - | |
Csa06g03854 | 275 | SMART | PP2C_4 | 23 | 272 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g03854 | Csa-Chr6:30575645 | Csa07g00485 | Csa-Chr7:3515190 | 9.80E-110 | dispersed | |
Csa06g03854 | Csa-Chr6:30575645 | Csa03g02203 | Csa-Chr3:19119262 | 6.25E-54 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03854 | - | - | csv:101211141 | 537.339 |