Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03855 ATGGGGAAGTTTCAAATCCGGAAATTCTTGATTCCATTTCTACTTCTGATGATTTCTGAGTATTTACAAACTGGAGATGCCAAAATCAATTCCCTTTTCATCAACTGTGGCTCAAGTTCAAATGAAACTGCTGATGGTAGGAAATGGATTGGCGACCTGATTTCAGAAGGGAACTTTTCTGTGGGCAATCTTGGTGCTAATATCAATGCCTCCACAGCCACTTTAAATGGCGATTCAGTCTTTGATCCGCTGTATAAAACTGCTAGGATATTTACTAATTCCCTGAACTATACGTTTAATGGCGTTTGGGGCAATCATGTTGTTCGGCTTCATTTCTGTCCCTTCCCTTTTGAGAACTTAAATGTGAACGATTCATCATTTTCTATCTCAGCAAATGGTCTTAGATTAGTTTCAGAGTTCAGTGTTCCCAACGAGATTGCATATAAGAATATGGAGTTTCAGCGTTCGGGGGTCAATTCAAGTTCATTCTCTTTGATTAAAGAGTTCATTATTTCTGTCAATTCAGAAGCATTTGTTCTTGAGTTCTCCCCTTCTGAAGGATCATTTGGGTTCATCAATGCTATTGAAATCGTTTCCCTGGTGGATGAGCTTTTTGGAGGTTCCATTGATAAGGTGGGTGGAAGTGCTGTTAGTTTGAATGTGAGTGAAAGGGGAACTGAAACTATGTACAGGTTGAACGTTGGAGGGCCTGTGATCAAGCCCACTCAAGATTCAAATCTATGGAGGATGTGGGAAGTGGACTCGAGCTATATGATTACAGCAAATGCTGGGTCTGAGGTACATAATAGTTCTAATGTAACATATGCATCCACGAATGACTCCATTGTAGCTCCTCTCTCTGTGTATGAAACAGCCAGAACAATGTCTGAGACTGAAGTCCTCGAGAAAAGGTTCAACATGTCGTGGAAATTCGAAATTCATCCTGGTTTCGAGTATTTGATTAGATTGCATTTCTGTGAGCTGGTGTATGAGAAGGCAAGAGAGAGGGTTTTCAAGATTTACATAAACAACAGGACTGCAGTTGAGAGTTTTGATGTGTTTGTACGTGCTGGGGGAATGAACAGAGCATATCATGTGGATTTCCTTGAACCAATTTCGTCCAAAATCAACACCCTTTGGATTCAACTAGGCCCGGATACGGCTGCAGGTGCTGCAGGAACAGATGCTCTCTTGAATGGTTTGGAAATCTTTAAGCTGAGTCAAAATGGGAATCTTGCGTACATTGACAGGTTTAATGCCTTGGAGGAATCAAAGGGAAACTCAAAATCTCAAATTCTCTGGATAGGCATTGGAGCAGGTTTAGCCTCTGTTGTTTTCCTTGCTGTTATTACCATTCTCATCATCTATTTCTGCAGAATCCGGAGAAGGAAATTTACAAAGAAGAACTCTTCTGGGTGGAGAGGAGGATCCAGTCATGGGGCCACCGTCACCAACACTTATGCCAGAGGGTCTGTGGGGGGAGGCCAAAGTGTGTTCGGGGCCTTGCCATCTATCAGAGTTGGCAAATGGTTTACATTAGCAGAGATTCTTGCAGCGACAGATAACTTTGATGAAGCTCTGATGATCGGAGTTGGGGGTTTTGGTAAGGTCTACAGAGGGGAGATTGATGATGGTACTCTTGTGGCAATCAAGAGAGCAAACCCCCAGTCTCAGCAGGGACTTGCTGAGTTCGAAACTGAAATCGAAATGCTTTCTAAACTTAGGCATAGACATCTGGTGTCAATGATAGGCTTTTGTGACGAGCAAAAGGAAATGATCTTGGTTTACGAATATATGGCGAATGGCACTCTTAGAAGCCATCTCTTTGGGAGTAATCTCCCACCTTTGACGTGGAAGCAGAGATTGGAAGTGTGCATTGGTTCAGCCAGGGGACTCCATTATCTTCACACAGGAGCTGAGAGAGGAATAATCCACAGAGATGTGAAGACGACCAACATACTCTTGGATGAAAACTTTGTTGCAAAAATGTCTGATTTTGGTCTTTCAAAAACAGGTCCTGCTTTGGATCACACTCATGTTAGTACTGCAGTTAAAGGCAGCTTCGGCTACCTCGATCCGGAGTACTTCAGGCGGCAGCAACTGAGTGAAAAATCTGATGTTTATTCTTTTGGTGTGGTATTGTTAGAAGTTGTTTGTGCAAGAGCTGTTATAAACCCAACTTTGCCTAAGGATCAGATAAATCTTGCAGAATGGGCAATGAAATGGCAGCGCAAAAAGTTGTTGCACACCATCATAGACCCACATCTTAAAGACAAATATTGTCCCGAATCTCTAAAAACATTTGGAGAAATAGCAGAAAAATGCCTCGCTGATGAAGGGAAGATTCGTCCAACAATGGGCGAAGTTTTATGGCACCTAGAATATTCTCTGCAACTCCATGATGCTTGGATACGCACTAATGATGCTCAGAGTTCTTTCGCAGTAAACTCAGAAGGAGCACAAGCTGAGGAACAGAGGCTAAATCTTGATGGGGAAGAGGAAAGCTCCAACACGAAAGCTTCAACTCCAACTGATCACTCATCCTAA 2547 42.6 MGKFQIRKFLIPFLLLMISEYLQTGDAKINSLFINCGSSSNETADGRKWIGDLISEGNFSVGNLGANINASTATLNGDSVFDPLYKTARIFTNSLNYTFNGVWGNHVVRLHFCPFPFENLNVNDSSFSISANGLRLVSEFSVPNEIAYKNMEFQRSGVNSSSFSLIKEFIISVNSEAFVLEFSPSEGSFGFINAIEIVSLVDELFGGSIDKVGGSAVSLNVSERGTETMYRLNVGGPVIKPTQDSNLWRMWEVDSSYMITANAGSEVHNSSNVTYASTNDSIVAPLSVYETARTMSETEVLEKRFNMSWKFEIHPGFEYLIRLHFCELVYEKARERVFKIYINNRTAVESFDVFVRAGGMNRAYHVDFLEPISSKINTLWIQLGPDTAAGAAGTDALLNGLEIFKLSQNGNLAYIDRFNALEESKGNSKSQILWIGIGAGLASVVFLAVITILIIYFCRIRRRKFTKKNSSGWRGGSSHGATVTNTYARGSVGGGQSVFGALPSIRVGKWFTLAEILAATDNFDEALMIGVGGFGKVYRGEIDDGTLVAIKRANPQSQQGLAEFETEIEMLSKLRHRHLVSMIGFCDEQKEMILVYEYMANGTLRSHLFGSNLPPLTWKQRLEVCIGSARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMSDFGLSKTGPALDHTHVSTAVKGSFGYLDPEYFRRQQLSEKSDVYSFGVVLLEVVCARAVINPTLPKDQINLAEWAMKWQRKKLLHTIIDPHLKDKYCPESLKTFGEIAEKCLADEGKIRPTMGEVLWHLEYSLQLHDAWIRTNDAQSSFAVNSEGAQAEEQRLNLDGEEESSNTKASTPTDHSS* 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30576449 30578995 + CsaV3_6G052410.1 Csa06g03855 535482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03855 848 Pfam Malectin-like domain 34 405 IPR024788 -
Csa06g03855 848 PANTHER OS07G0166700 PROTEIN 21 831 IPR045272 GO:0004714|GO:0006468
Csa06g03855 848 Pfam Protein tyrosine and serine/threonine kinase 528 790 IPR001245 GO:0004672|GO:0006468
Csa06g03855 848 MobiDBLite consensus disorder prediction 814 848 - -
Csa06g03855 848 Gene3D - 224 408 - -
Csa06g03855 848 Gene3D - 30 200 - -
Csa06g03855 848 CDD STKc_IRAK 529 794 - -
Csa06g03855 848 Gene3D Phosphorylase Kinase; domain 1 503 598 - -
Csa06g03855 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Csa06g03855 848 SUPERFAMILY Protein kinase-like (PK-like) 503 795 IPR011009 -
Csa06g03855 848 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Csa06g03855 848 ProSiteProfiles Protein kinase domain profile. 523 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03855 848 SMART serkin_6 523 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03855 848 Gene3D Transferase(Phosphotransferase) domain 1 599 818 - -
Csa06g03855 848 PANTHER OSJNBA0058K23.13 PROTEIN 21 831 - -
Csa06g03855 848 MobiDBLite consensus disorder prediction 834 848 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01849 Csa-Chr3:14225578 Csa06g03855 Csa-Chr6:30576449 2.59E-74 dispersed
Csa03g02768 Csa-Chr3:26529068 Csa06g03855 Csa-Chr6:30576449 5.22E-41 dispersed
Csa03g02769 Csa-Chr3:26529383 Csa06g03855 Csa-Chr6:30576449 1.48E-83 dispersed
Csa04g01700 Csa-Chr4:16396422 Csa06g03855 Csa-Chr6:30576449 0 dispersed
Csa06g03855 Csa-Chr6:30576449 Csa07g02213 Csa-Chr7:20798979 0 dispersed
Csa06g03855 Csa-Chr6:30576449 Csa06g01709 Csa-Chr6:15028080 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78452 PF12819 Malectin_like 5.90E-31 CL0202 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03855 - - csv:101216703 1693.32