Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03859 ATGTCTCGGAGATCGACTAGGTTAGTGGAAAAGACGAATGTTGTATCTGAGGGAAACCTTAAAGCTCATAGAAGGAGTCAAAAGTCGACACAAAATAATGAGGTTAAGCTAAATGAAGTTATGTTTCCCCCATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACGTACAATAAGAGGTCAATGGTCACAAAAGCAACTGCTTCGAAGAATCAGGGGATCGACAAAAAAGGGAGTGGGAGATTAAGGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGCGGTGAATTTGAGGCTGGGAACGATGTTTATGTGAAGAGGAGAGAAGATGCAAGCTCTGATGATGAAGATCCTGAAGTTGAGGAGTGTAGAGTGTGCTTTAAATCTGGAAACGCTATAATGATAGAGTGTGATGACTGTCTTGGTGATTTCCATTTGAAGTGTTTGAAGCCTCCAATGAAGGTGGTTCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAGGCTGCCAAATTGGGCAAAGAGGTTCAATTGCCAAAGCCTCCGGAGGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTAGCTGGCGATTTATGGGCTGCTCACATTGAAAGTATATGGAAAGAAGTAACGGAAGAGACTGCAGCTGGAAGGCAACCGCATAACTTGAAGAGAGAGCTTTACTTGACTAATGATTTTGCAGATATTGAGATGGAATCGCTTCTTAGACTGTGTGAAGTCATGAATCCGAAAGACTATTATAAAGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATGAATATGGCGTTCGTTGGCATAGTTTCAAGAGGTTGGCTGAAATTGATAAAGAACAGGATAGTGAAGCAGTTGATAGTGACACAGAGTGGAAGTTGGACCAGAATGCAGATTCCGATTCAGACGGTGATGTGAAATATGAAGAAGAGAGAGCACAAATTTTACTATCTCGAATTAGCTCAACCCATGAATTAGCTGCAAATTCAAAGAAAGGACAATTTTGTGGACTACAAAAGATAGGAGCTAAGAAGATCCCAGAGCATACAAGAAGTCGCAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCACTACCCAAGTCCCTTCCGTGTAGAAATAAAGAAATCGAGGAGATAACTACATTTATTGAAAGTGCTTTATGTGATGATCAATGCTTGGGTCGATGCTTGTACATCTATGGTGTTCCAGGAACAGGTAAGACAATGAGTGTGCTGTCGGTAATGAGAAACTTGCGGGCTAAAGTTGATGCAGGAAATCTAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCAGCACCAGAAAATATATACAGGGTTATTCATGAAGCATTAACTGGGCATAGGGTTAATTGGAAAAAGGCGCTTCAGTTGTTGACCAAACGTTTTTCAGACGTAAATAGTTGCAGGGATGATGAGCGACCTTGCATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAATTCTGTACAACATTCTCGATTGGCCTACAAAGCCACAAGCCAAGTTGATTGTGATAGGAATTGCAAATACCATGGACCTACCAGAGAAGTTGCTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGA 1674 41.52 MSRRSTRLVEKTNVVSEGNLKAHRRSQKSTQNNEVKLNEVMFPPSFEQLEGKKRKTYNKRSMVTKATASKNQGIDKKGSGRLRKRVYYQKVVFDGGEFEAGNDVYVKRREDASSDDEDPEVEECRVCFKSGNAIMIECDDCLGDFHLKCLKPPMKVVPEGDWICGFCEAAKLGKEVQLPKPPEGKKRVRTMREKLLAGDLWAAHIESIWKEVTEETAAGRQPHNLKRELYLTNDFADIEMESLLRLCEVMNPKDYYKAKEGDDIFLCEYEYGVRWHSFKRLAEIDKEQDSEAVDSDTEWKLDQNADSDSDGDVKYEEERAQILLSRISSTHELAANSKKGQFCGLQKIGAKKIPEHTRSRKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQCLGRCLYIYGVPGTGKTMSVLSVMRNLRAKVDAGNLRPHCFVEVNGLKLAAPENIYRVIHEALTGHRVNWKKALQLLTKRFSDVNSCRDDERPCILLIDELDLLVTRNQSILYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERL* 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30586199 30587911 + CsaV3_6G052450.1 Csa06g03859 535486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03859 557 SMART AAA_5 405 556 IPR003593 -
Csa06g03859 557 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 61 557 - -
Csa06g03859 557 ProSitePatterns Zinc finger PHD-type signature. 124 167 IPR019786 -
Csa06g03859 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 178 IPR013083 -
Csa06g03859 557 Gene3D - 361 557 IPR027417 -
Csa06g03859 557 SMART PHD_3 123 168 IPR001965 -
Csa06g03859 557 MobiDBLite consensus disorder prediction 16 40 - -
Csa06g03859 557 SUPERFAMILY FYVE/PHD zinc finger 110 173 IPR011011 -
Csa06g03859 557 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 61 557 IPR020793 -
Csa06g03859 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 553 IPR027417 -
Csa06g03859 557 CDD AAA 386 555 - -
Csa06g03859 557 Pfam ATPase family associated with various cellular activities (AAA) 409 555 IPR003959 GO:0005524|GO:0016887
Csa06g03859 557 ProSiteProfiles Zinc finger PHD-type profile. 121 170 IPR019787 -
Csa06g03859 557 MobiDBLite consensus disorder prediction 287 312 - -
Csa06g03859 557 Pfam PHD-finger 124 169 IPR019787 -
Csa06g03859 557 Gene3D - 197 307 IPR043151 -
Csa06g03859 557 ProSiteProfiles BAH domain profile. 168 282 IPR001025 GO:0003682
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02770 Csa-Chr3:26531188 Csa06g03859 Csa-Chr6:30586199 0 dispersed
Csa06g01433 Csa-Chr6:12225834 Csa06g03859 Csa-Chr6:30586199 3.05E-11 dispersed
Csa06g03859 Csa-Chr6:30586199 Csa06g03902 Csa-Chr6:30857482 7.48E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32217 PF00004 AAA 1.40E-19 CL0023 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03859 K02603 - csv:101214082 1045.8