Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03875 ATGTTGTTGTTGTTTGAGATGGAGAATTATGAAGAAGTAGGTGATTTGACTGATATTGTAAGAGGAAGATCATCAACAACAACAACAAGAAGCTCTACTACTACTACTACTACTACTACTTCTTCTTCTTCTAATTGCAAGACTGAAATATTAGCTGATCATCATCTTCAAGATTCCACCTCTTTCTATTATTCTTCTTCATCACAACTGCTGCAACTACAAGATCATCAACATCATCAGTACAATTTTGGAGATCCATTTTGCAGTGTTGTTGCTCCTTCAGTACTTGATCATCATCTTCATCAACATCATCATCAGCTGCCTGTGGATAATAGTACTAATATTAATGCTTTTTTCAATGGAATTTCTGCTTCTTCTACTACTACTACTGCTGCTGCTGCTCATCAAGATCATGAAGATCATCATGAGGTTATGAAGAGCAGCCCTTGTAATTCCAATTTATTCTCACGTATGCTTCAGATCTCTCCTTCACCCAACAAATTCCAAACCATTTCTTCACTTACGAATAATTCCCCACCTCCTTCTAATTTCTTAATTTCAAATCATTCTCCTACCACTACTACTACTCCACTGCATCCTGATCATCACCTTCATCATTTTCTTCATCATCATGATCATAATAATAATAATAACAATAATACCTCCTCCGCCCTTCACATCTCTTCTCCTCGGAATCCCCCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAGGTGGTTTGTGTTCCAGCTCCAGTGGCTGCCAGTAGTAGACCAAATGGGGAAGTGATTCCTTCTGATCTTTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGTTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAAGGATGTTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGTTGGTGATAACTTACACATCTGAACACAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGCTCTTCAAGATCATCTCAACAATCATCAAAAAACAACACTTCTACTATTACTACTACATCTACTACAACACAACCCAATTCTTCAAAATTAGTCCATCATAAAAATAAACAAGAAGTTCAAGAAGAAGAAGAAGAACAAGATCATGAAAACAACAACGATGGAACGACAATGACATTATTATCATCAACAGCAGCAGTAGATGAAGAAGCATCAAATAAGAATAATAATAATGTTAAGGAAGAGGAGATGATTGAGAATGAATTGATGATGAGTAGCACTAGTGAAGGAGGGTTAATTGATGAAGATCATGATTTCTTTGCAGATTTGGAAGAATTAGAAACCGACCCATTAACTCTCTTGTTCAATACAACTACACAACAACAACAACAACAACAACAACATCTACAACAACCACCTCACAAATTAGAGCAAATAATCAAAGGATCAGCTGCAGCTGCCTGCTTACACGACGTCGTTCCATTCAATCATCTTTTTGATTGGCCTCCTCCACCTCACCAGGAACAACCACCACCGAGTTCTCCTACCAACAGAGGTTTTTATTAA 1566 38.31 MLLLFEMENYEEVGDLTDIVRGRSSTTTTRSSTTTTTTTTSSSSNCKTEILADHHLQDSTSFYYSSSSQLLQLQDHQHHQYNFGDPFCSVVAPSVLDHHLHQHHHQLPVDNSTNINAFFNGISASSTTTTAAAAHQDHEDHHEVMKSSPCNSNLFSRMLQISPSPNKFQTISSLTNNSPPPSNFLISNHSPTTTTTPLHPDHHLHHFLHHHDHNNNNNNNTSSALHISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSSQQSSKNNTSTITTTSTTTQPNSSKLVHHKNKQEVQEEEEEQDHENNNDGTTMTLLSSTAAVDEEASNKNNNNVKEEEMIENELMMSSTSEGGLIDEDHDFFADLEELETDPLTLLFNTTTQQQQQQQQHLQQPPHKLEQIIKGSAAAACLHDVVPFNHLFDWPPPPHQEQPPPSSPTNRGFY* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30645979 30650216 - CsaV3_6G052610.1 Csa06g03875 535502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03875 521 MobiDBLite consensus disorder prediction 318 364 - -
Csa06g03875 521 SMART WRKY_cls 265 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g03875 521 MobiDBLite consensus disorder prediction 23 43 - -
Csa06g03875 521 SUPERFAMILY WRKY DNA-binding domain 264 326 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g03875 521 MobiDBLite consensus disorder prediction 209 244 - -
Csa06g03875 521 ProSiteProfiles WRKY domain profile. 260 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g03875 521 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 469 IPR044810 GO:0003700
Csa06g03875 521 MobiDBLite consensus disorder prediction 318 390 - -
Csa06g03875 521 MobiDBLite consensus disorder prediction 500 521 - -
Csa06g03875 521 Gene3D WRKY domain 239 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g03875 521 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 13 469 - -
Csa06g03875 521 MobiDBLite consensus disorder prediction 214 229 - -
Csa06g03875 521 Pfam WRKY DNA -binding domain 267 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02661 Csa-Chr1:23633542 Csa06g03875 Csa-Chr6:30645979 4.07E-60 dispersed
Csa04g00126 Csa-Chr4:722761 Csa06g03875 Csa-Chr6:30645979 1.71E-31 dispersed
Csa04g00611 Csa-Chr4:4040395 Csa06g03875 Csa-Chr6:30645979 1.87E-34 dispersed
Csa05g00101 Csa-Chr5:504127 Csa06g03875 Csa-Chr6:30645979 4.23E-34 dispersed
Csa06g03875 Csa-Chr6:30645979 Csa07g00476 Csa-Chr7:3456072 5.59E-35 dispersed
Csa06g03875 Csa-Chr6:30645979 Csa03g00861 Csa-Chr3:7225695 9.30E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32218 PF03106 WRKY 3.10E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03875 - - csv:101209169 803.127