Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03875 | ATGTTGTTGTTGTTTGAGATGGAGAATTATGAAGAAGTAGGTGATTTGACTGATATTGTAAGAGGAAGATCATCAACAACAACAACAAGAAGCTCTACTACTACTACTACTACTACTACTTCTTCTTCTTCTAATTGCAAGACTGAAATATTAGCTGATCATCATCTTCAAGATTCCACCTCTTTCTATTATTCTTCTTCATCACAACTGCTGCAACTACAAGATCATCAACATCATCAGTACAATTTTGGAGATCCATTTTGCAGTGTTGTTGCTCCTTCAGTACTTGATCATCATCTTCATCAACATCATCATCAGCTGCCTGTGGATAATAGTACTAATATTAATGCTTTTTTCAATGGAATTTCTGCTTCTTCTACTACTACTACTGCTGCTGCTGCTCATCAAGATCATGAAGATCATCATGAGGTTATGAAGAGCAGCCCTTGTAATTCCAATTTATTCTCACGTATGCTTCAGATCTCTCCTTCACCCAACAAATTCCAAACCATTTCTTCACTTACGAATAATTCCCCACCTCCTTCTAATTTCTTAATTTCAAATCATTCTCCTACCACTACTACTACTCCACTGCATCCTGATCATCACCTTCATCATTTTCTTCATCATCATGATCATAATAATAATAATAACAATAATACCTCCTCCGCCCTTCACATCTCTTCTCCTCGGAATCCCCCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAGGTGGTTTGTGTTCCAGCTCCAGTGGCTGCCAGTAGTAGACCAAATGGGGAAGTGATTCCTTCTGATCTTTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGTTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAAGGATGTTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGTTGGTGATAACTTACACATCTGAACACAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGCTCTTCAAGATCATCTCAACAATCATCAAAAAACAACACTTCTACTATTACTACTACATCTACTACAACACAACCCAATTCTTCAAAATTAGTCCATCATAAAAATAAACAAGAAGTTCAAGAAGAAGAAGAAGAACAAGATCATGAAAACAACAACGATGGAACGACAATGACATTATTATCATCAACAGCAGCAGTAGATGAAGAAGCATCAAATAAGAATAATAATAATGTTAAGGAAGAGGAGATGATTGAGAATGAATTGATGATGAGTAGCACTAGTGAAGGAGGGTTAATTGATGAAGATCATGATTTCTTTGCAGATTTGGAAGAATTAGAAACCGACCCATTAACTCTCTTGTTCAATACAACTACACAACAACAACAACAACAACAACAACATCTACAACAACCACCTCACAAATTAGAGCAAATAATCAAAGGATCAGCTGCAGCTGCCTGCTTACACGACGTCGTTCCATTCAATCATCTTTTTGATTGGCCTCCTCCACCTCACCAGGAACAACCACCACCGAGTTCTCCTACCAACAGAGGTTTTTATTAA | 1566 | 38.31 | MLLLFEMENYEEVGDLTDIVRGRSSTTTTRSSTTTTTTTTSSSSNCKTEILADHHLQDSTSFYYSSSSQLLQLQDHQHHQYNFGDPFCSVVAPSVLDHHLHQHHHQLPVDNSTNINAFFNGISASSTTTTAAAAHQDHEDHHEVMKSSPCNSNLFSRMLQISPSPNKFQTISSLTNNSPPPSNFLISNHSPTTTTTPLHPDHHLHHFLHHHDHNNNNNNNTSSALHISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSSQQSSKNNTSTITTTSTTTQPNSSKLVHHKNKQEVQEEEEEQDHENNNDGTTMTLLSSTAAVDEEASNKNNNNVKEEEMIENELMMSSTSEGGLIDEDHDFFADLEELETDPLTLLFNTTTQQQQQQQQHLQQPPHKLEQIIKGSAAAACLHDVVPFNHLFDWPPPPHQEQPPPSSPTNRGFY* | 522 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 30645979 | 30650216 | - | CsaV3_6G052610.1 | Csa06g03875 | 535502 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03875 | 521 | MobiDBLite | consensus disorder prediction | 318 | 364 | - | - | |
Csa06g03875 | 521 | SMART | WRKY_cls | 265 | 325 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g03875 | 521 | MobiDBLite | consensus disorder prediction | 23 | 43 | - | - | |
Csa06g03875 | 521 | SUPERFAMILY | WRKY DNA-binding domain | 264 | 326 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g03875 | 521 | MobiDBLite | consensus disorder prediction | 209 | 244 | - | - | |
Csa06g03875 | 521 | ProSiteProfiles | WRKY domain profile. | 260 | 326 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g03875 | 521 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 13 | 469 | IPR044810 | GO:0003700 | |
Csa06g03875 | 521 | MobiDBLite | consensus disorder prediction | 318 | 390 | - | - | |
Csa06g03875 | 521 | MobiDBLite | consensus disorder prediction | 500 | 521 | - | - | |
Csa06g03875 | 521 | Gene3D | WRKY domain | 239 | 319 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g03875 | 521 | PANTHER | WRKY TRANSCRIPTION FACTOR 14-RELATED | 13 | 469 | - | - | |
Csa06g03875 | 521 | MobiDBLite | consensus disorder prediction | 214 | 229 | - | - | |
Csa06g03875 | 521 | Pfam | WRKY DNA -binding domain | 267 | 324 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02661 | Csa-Chr1:23633542 | Csa06g03875 | Csa-Chr6:30645979 | 4.07E-60 | dispersed | |
Csa04g00126 | Csa-Chr4:722761 | Csa06g03875 | Csa-Chr6:30645979 | 1.71E-31 | dispersed | |
Csa04g00611 | Csa-Chr4:4040395 | Csa06g03875 | Csa-Chr6:30645979 | 1.87E-34 | dispersed | |
Csa05g00101 | Csa-Chr5:504127 | Csa06g03875 | Csa-Chr6:30645979 | 4.23E-34 | dispersed | |
Csa06g03875 | Csa-Chr6:30645979 | Csa07g00476 | Csa-Chr7:3456072 | 5.59E-35 | dispersed | |
Csa06g03875 | Csa-Chr6:30645979 | Csa03g00861 | Csa-Chr3:7225695 | 9.30E-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32218 | PF03106 | WRKY | 3.10E-25 | CL0274 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03875 | - | - | csv:101209169 | 803.127 |