Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03876 ATGGATTCAGCAAGGAGTTGGTTTCAGAAGTTCCAAACTAGAGTAAAGAAGGAAACTGTAAGTGACAATGAGGCTCCGGATGTACCTTCAAGTGCGACGAAGCAGAAAGTTGAGGTTGCCAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGAAGGCTTGCTGATGCGGATGCTTCTGAGGAAGACCAAATAAATGTTCTTAAATATTTAGAACAGAAGGAGACAGAATACATGCGCCTTCGTAGACATAAAATGGGTGTCGATGACTTTGAACTTTTGACAATTATAGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAACCACAGGTCATGTATATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTCAAAGCCGAAAGAAATCTTCTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGATGATTTTTTGTATCTTATTATGCAATATCTCCCTGGAGGTGATATGATGACCCTATTAATGCGCAAGGATATTTTGACAGAGAATGAGGCTAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATTCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTCCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTCACCGAGGAAGAAAAAGTAATGGTGAAGAATGTCAGATCTTCCACAGAAAATGGTAGTCAAACTAGTGTATCAAAACGGACACAACAAGAACAATTGATACATTGGCAAAAGAACAGACGAACATTGGCTTATTCAGCTGTTGGAACACCGGACTATATCGCCCCAGAAGTGTTATTGAGGAAGGGATATGGAATGGAGTGCGACTGGTGGTCTCTTGGTGCAATCATGTACGAAATGCTTGTGGGATTTCCACCTTTCTATTCTGATGATCCAATGTCTACATGTAGAAAGATTATTAACTGGAGAACACATTTGAGATTCCCTACAGAAGCAAAAATTTCCATCGAGGCCAAAGATCTTATTTGCAAACTTTTATGCAATGTTGAGCAAAGGCTTGGAACCAAAGGAGCTAAAGAAATTAAGGCGCATCCATGGTTTAAAGGTACACAATGGGATAAATTGTATCAAATGGAAGCTGTTATAATCCCAGAAATACAGGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGCTGGGTGTGCCAGGGCAAACTACATCAAAGTCGGGCCCTTTGAGAAAGAAGCTTTCACCCAAGGACGTGAACTTTGTTGGTTACACATACAAGAATTTTGAAATTGTCAACGAACACCACTTGTCTGGCATTACTGAGATGAGGAAAAAGCCAATCAAGACCAAGAGACCATCTGTGACAACTCTATTTGCCAAAGAAGATTCTTCCGAGCAGTCTGTTCAAAGAAGTCTTCCTAATCATTTGCCAACCCATCTTGAAGTCTCAGAAAGCCCCGATCCATCACCTCGTTCAACCGGATCACAGCAACAGCCGAAACGGTGGGGAAGATGA 1653 41.14 MDSARSWFQKFQTRVKKETVSDNEAPDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADASEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKTTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDDDFLYLIMQYLPGGDMMTLLMRKDILTENEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEEEKVMVKNVRSSTENGSQTSVSKRTQQEQLIHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPTEAKISIEAKDLICKLLCNVEQRLGTKGAKEIKAHPWFKGTQWDKLYQMEAVIIPEIQDELDTRNFEKYEELGVPGQTTSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITEMRKKPIKTKRPSVTTLFAKEDSSEQSVQRSLPNHLPTHLEVSESPDPSPRSTGSQQQPKRWGR* 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30657025 30664974 - CsaV3_6G052620.1 Csa06g03876 535503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03876 550 ProSiteProfiles Protein kinase domain profile. 106 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03876 550 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Csa06g03876 550 CDD STKc_NDR_like 104 472 - -
Csa06g03876 550 Gene3D Transferase(Phosphotransferase) domain 1 299 428 - -
Csa06g03876 550 Gene3D Transferase(Phosphotransferase) domain 1 190 257 - -
Csa06g03876 550 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 510 - -
Csa06g03876 550 SMART pkinase_C_6 409 473 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa06g03876 550 SUPERFAMILY Protein kinase-like (PK-like) 87 454 IPR011009 -
Csa06g03876 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Csa06g03876 550 MobiDBLite consensus disorder prediction 504 550 - -
Csa06g03876 550 SMART serkin_6 106 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03876 550 MobiDBLite consensus disorder prediction 531 550 - -
Csa06g03876 550 MobiDBLite consensus disorder prediction 504 524 - -
Csa06g03876 550 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa06g03876 550 Pfam Protein kinase domain 107 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03876 550 Gene3D Phosphorylase Kinase; domain 1 78 189 - -
Csa06g03876 550 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 28 510 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02951 Csa-Chr1:25888812 Csa06g03876 Csa-Chr6:30657025 0 dispersed
Csa05g00547 Csa-Chr5:3529216 Csa06g03876 Csa-Chr6:30657025 2.78E-79 dispersed
Csa06g03876 Csa-Chr6:30657025 Csa07g01616 Csa-Chr7:16674560 0 dispersed
Csa06g03876 Csa-Chr6:30657025 Csa04g02559 Csa-Chr4:25208589 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78453 PF00069 Pkinase 9.30E-65 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03876 K08790 - csv:101208438 1117.45