Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03876 | ATGGATTCAGCAAGGAGTTGGTTTCAGAAGTTCCAAACTAGAGTAAAGAAGGAAACTGTAAGTGACAATGAGGCTCCGGATGTACCTTCAAGTGCGACGAAGCAGAAAGTTGAGGTTGCCAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGAAGGCTTGCTGATGCGGATGCTTCTGAGGAAGACCAAATAAATGTTCTTAAATATTTAGAACAGAAGGAGACAGAATACATGCGCCTTCGTAGACATAAAATGGGTGTCGATGACTTTGAACTTTTGACAATTATAGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAACCACAGGTCATGTATATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTCAAAGCCGAAAGAAATCTTCTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGATGATTTTTTGTATCTTATTATGCAATATCTCCCTGGAGGTGATATGATGACCCTATTAATGCGCAAGGATATTTTGACAGAGAATGAGGCTAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATTCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTCCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTCACCGAGGAAGAAAAAGTAATGGTGAAGAATGTCAGATCTTCCACAGAAAATGGTAGTCAAACTAGTGTATCAAAACGGACACAACAAGAACAATTGATACATTGGCAAAAGAACAGACGAACATTGGCTTATTCAGCTGTTGGAACACCGGACTATATCGCCCCAGAAGTGTTATTGAGGAAGGGATATGGAATGGAGTGCGACTGGTGGTCTCTTGGTGCAATCATGTACGAAATGCTTGTGGGATTTCCACCTTTCTATTCTGATGATCCAATGTCTACATGTAGAAAGATTATTAACTGGAGAACACATTTGAGATTCCCTACAGAAGCAAAAATTTCCATCGAGGCCAAAGATCTTATTTGCAAACTTTTATGCAATGTTGAGCAAAGGCTTGGAACCAAAGGAGCTAAAGAAATTAAGGCGCATCCATGGTTTAAAGGTACACAATGGGATAAATTGTATCAAATGGAAGCTGTTATAATCCCAGAAATACAGGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGCTGGGTGTGCCAGGGCAAACTACATCAAAGTCGGGCCCTTTGAGAAAGAAGCTTTCACCCAAGGACGTGAACTTTGTTGGTTACACATACAAGAATTTTGAAATTGTCAACGAACACCACTTGTCTGGCATTACTGAGATGAGGAAAAAGCCAATCAAGACCAAGAGACCATCTGTGACAACTCTATTTGCCAAAGAAGATTCTTCCGAGCAGTCTGTTCAAAGAAGTCTTCCTAATCATTTGCCAACCCATCTTGAAGTCTCAGAAAGCCCCGATCCATCACCTCGTTCAACCGGATCACAGCAACAGCCGAAACGGTGGGGAAGATGA | 1653 | 41.14 | MDSARSWFQKFQTRVKKETVSDNEAPDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADASEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKTTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDDDFLYLIMQYLPGGDMMTLLMRKDILTENEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEEEKVMVKNVRSSTENGSQTSVSKRTQQEQLIHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPTEAKISIEAKDLICKLLCNVEQRLGTKGAKEIKAHPWFKGTQWDKLYQMEAVIIPEIQDELDTRNFEKYEELGVPGQTTSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITEMRKKPIKTKRPSVTTLFAKEDSSEQSVQRSLPNHLPTHLEVSESPDPSPRSTGSQQQPKRWGR* | 551 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 30657025 | 30664974 | - | CsaV3_6G052620.1 | Csa06g03876 | 535503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03876 | 550 | ProSiteProfiles | Protein kinase domain profile. | 106 | 408 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g03876 | 550 | ProSitePatterns | Protein kinases ATP-binding region signature. | 112 | 135 | IPR017441 | GO:0005524 | |
Csa06g03876 | 550 | CDD | STKc_NDR_like | 104 | 472 | - | - | |
Csa06g03876 | 550 | Gene3D | Transferase(Phosphotransferase) domain 1 | 299 | 428 | - | - | |
Csa06g03876 | 550 | Gene3D | Transferase(Phosphotransferase) domain 1 | 190 | 257 | - | - | |
Csa06g03876 | 550 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 28 | 510 | - | - | |
Csa06g03876 | 550 | SMART | pkinase_C_6 | 409 | 473 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Csa06g03876 | 550 | SUPERFAMILY | Protein kinase-like (PK-like) | 87 | 454 | IPR011009 | - | |
Csa06g03876 | 550 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 225 | 237 | IPR008271 | GO:0004672|GO:0006468 | |
Csa06g03876 | 550 | MobiDBLite | consensus disorder prediction | 504 | 550 | - | - | |
Csa06g03876 | 550 | SMART | serkin_6 | 106 | 408 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g03876 | 550 | MobiDBLite | consensus disorder prediction | 531 | 550 | - | - | |
Csa06g03876 | 550 | MobiDBLite | consensus disorder prediction | 504 | 524 | - | - | |
Csa06g03876 | 550 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 409 | 481 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Csa06g03876 | 550 | Pfam | Protein kinase domain | 107 | 408 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g03876 | 550 | Gene3D | Phosphorylase Kinase; domain 1 | 78 | 189 | - | - | |
Csa06g03876 | 550 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 28 | 510 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02951 | Csa-Chr1:25888812 | Csa06g03876 | Csa-Chr6:30657025 | 0 | dispersed | |
Csa05g00547 | Csa-Chr5:3529216 | Csa06g03876 | Csa-Chr6:30657025 | 2.78E-79 | dispersed | |
Csa06g03876 | Csa-Chr6:30657025 | Csa07g01616 | Csa-Chr7:16674560 | 0 | dispersed | |
Csa06g03876 | Csa-Chr6:30657025 | Csa04g02559 | Csa-Chr4:25208589 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78453 | PF00069 | Pkinase | 9.30E-65 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03876 | K08790 | - | csv:101208438 | 1117.45 |