Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03896 ATGGCGCCGGGCCTCAGAGACCTCCAGCTGGCCCATGTCGCCGCCGATGACCGTCGCCTACCGGCTATTTCTGCGGCTGATGACATCCCCGAAGATCTTGAGGATGTTCGTTTGCTTGATTCGTACGAGAGGCAGGAAGAGAATTTGGGTCAAATTCGGGATGGTATGAACAGGGTTCAGGTCACAGTTTCTGGGATGACTTGCGCTGCTTGTTCTAATTCCGTGGAGGCTGCTCTCAGGGGCGTTAATGGCGTTTTGATGGCTTCCGTTGCATTGCTTCAGAACAGAGCTGACGTGGTGTTTGATCCCAGCTTGGTTAAGGAGGAGGACATCAAGGAAGCAATCGAAGATGCTGGATTTGAGGCTGAGATTATACCTGAAACCACTTCAGTTGGAAAGAAGTCGCATGGAACACTGGTGGGTCAATTTACCATAGGTGGTATGACATGTGCAGCATGTGTGAATTCGGTAGAAGGCATATTAAAAGATCTTCCCGGTGTTAGAAGAGCAGTAGTTGCTTTGGCCACATCGTTGGGAGAAGTTGAATATGATCCAACAATAACCAGTAAAGACGATATAGTTAACGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGTGAGCAAGATAAAATTTTACTCACGGTTGCAGGCATTGCTGGTGAGGTTGATGTACAGTTTTTGGAAGCCATACTTAGTAACTTGAAAGGGGTGAAACGGTTTCTTTTTGACAGTACATCAGGAAGACTTGAAATTGTTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAACAGGAAATTTAAACTGCATGTTACAAGCCCTTACACAAGGTTAACATCTAAAGATGTTGAAGAGGCTAACAACATGTTTCGGCTTTTTATCTCCAGTCTGTTTCTCAGTGTACTCATCTTTCTCCAAAGAGTAATATGTCCTCACATTCCTTTAATCTACTCATTGTTACTCTGGCGCTGTGGGCCCTTCCTCATGGATGATTGGTTAAAGTGGGCATTGGTGACTGTTGTGCAATTTGTCATTGGAAAGCGCTTTTATGTTGCAGCTGCTAGAGCCCTTCGAAATGGTTCAACTAACATGGATGTCTTGGTTGCTTTGGGTACTACGGCCTCTTACGTCTATTCTGTTTGTGCACTACTCTATGGTGCAGTCACTGGATTCTGGTCTCCGACGTATTTTGAAACAAGTGCTATGTTGATAACTTTTGTATTATTGGGAAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACTGCTTTACTGCTTATCCGAGATAAAGGTGGGAATCTTATAGAAGAAAGGGAGATCGATGCTCTGTTAATTCAACCTGGAGATGTGTTGAAGGTTCTTCCTGGTACAAAAATTCCAGCGGATGGTGTTGTTGTTTGGGGTTCAAGTTATGTTAATGAGAGTATGGTTACTGGAGAATCTATACCTGTATTGAAGGAGGTTAGCTTGAACGTTATTGGTGGTACAATTAATTTTCATGGAGCCCTTCACATTCGAGCAACAAAAGTAGGGTCTGATGCAGTTTTGAACCAGATTATCAGTTTGGTTGAGACAGCTCAGATGTCTAAAGCCCCCATTCAGAAATTTGCTGACTTTGTTGCAAGCATATTTGTTCCAACCGTCGTTGCTATGGCATTATGTACCTTATTTGGTTGGTACGTTGGAGGAATCCTTGGGGCTTATCCTGCTGAATGGCTCCCAGAAAATGGAAATTACTTTGTATTTTCCCTCATGTTCGCAATAGCAGTGGTAGTTATTGCATGTCCTTGTGCACTAGGCTTGGCCACACCTACTGCTGTCATGGTTGCTACAGGGGTTGGCGCCAGCAATGGTGTCTTGATCAAAGGAGGAGATGCTTTGGAGAGGGCCCAAAAGGTTAAGTACGTGATTTTTGATAAAACAGGCACACTAACCCAAGGGAAAGCGACCGTTACTACGGCCAAAATTTTCACAGAAATTTCTCGAGGAGATTTTCTTAAGTTGGTTGCTTCAGCAGAGGCTAGCAGTGAACACCCACTGGGAAAAGCTATAGTTGAGTATGCACGTCATTTCCATTTCTTTGATGAGCCTTCTGCCACCAAAAATGTGGAAAATCAAAGTAAAGAGTCTTCTGGATGGCTTTTTGATGTCACAGATTTCTCTGCATTGCCAGGCCAAGGCATTCAGTGCACTATTGAGGGAAAAAGGATTCTGGTTGGCAACAGGAAGTTGATGAATGAAAGAGGAATATCCATAGCACCTCATGTAGATAATTTCGTTATAGAACTTGAAGAAAGTGCAAAGACAGGCATTCTTGTTGCATGTGATGACAACTTAATTGGAGTTGTGGGAATTGCAGATCCACTGAAGCGAGAAGCTGCAGTTGTTGTTGAGGGTCTTGTAAAAATGGGAGTATCTCCAGTCATGGTTACAGGGGATAATTGGAGAACAGCTCGAGCTGTCGCCAAAGAGCTTGGTATACAAGATGTGAGGGCAGAAGTAATGCCAGCAGGAAAAGCCGAAGTCATCCAAAACTTCCAAAAGGATGGAAGCACAGTTGCAATGGTAGGCGATGGTATCAATGACTCGCCAGCTCTAGCTGCTTCTGACATTGGAATCGCAATTGGTGCTGGAACTGATATTGCCATTGAGGCAGCCGACTTCGTCTTGATGAGAAATAATTTAGAAGATGTAATTACAGCCATCGATCTCTCAAGGAAGACTTTCAATCGAATTCGATTGAATTACGTGTTTGCAATGGCCTACAATGTAATAGCAATTCCTATTGCTGCCGGAGTCTTCTTTCCTTCTTTGGGGGTTAAATTGCCTCCATGGGCAGCCGGTGCGTGCATGGCTTTGTCATCTGTAAGTGTTGTTTGCTCATCTCTACTTCTTAGAAGATATAAAAGACCAAGACTTACAACAATACTCGAAATAACTGTAGAATAG 3024 43.75 MAPGLRDLQLAHVAADDRRLPAISAADDIPEDLEDVRLLDSYERQEENLGQIRDGMNRVQVTVSGMTCAACSNSVEAALRGVNGVLMASVALLQNRADVVFDPSLVKEEDIKEAIEDAGFEAEIIPETTSVGKKSHGTLVGQFTIGGMTCAACVNSVEGILKDLPGVRRAVVALATSLGEVEYDPTITSKDDIVNAIEDAGFEASFVQSSEQDKILLTVAGIAGEVDVQFLEAILSNLKGVKRFLFDSTSGRLEIVFDPEVVGPRSLVDEIEGRSNRKFKLHVTSPYTRLTSKDVEEANNMFRLFISSLFLSVLIFLQRVICPHIPLIYSLLLWRCGPFLMDDWLKWALVTVVQFVIGKRFYVAAARALRNGSTNMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKGGNLIEEREIDALLIQPGDVLKVLPGTKIPADGVVVWGSSYVNESMVTGESIPVLKEVSLNVIGGTINFHGALHIRATKVGSDAVLNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMALCTLFGWYVGGILGAYPAEWLPENGNYFVFSLMFAIAVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKIFTEISRGDFLKLVASAEASSEHPLGKAIVEYARHFHFFDEPSATKNVENQSKESSGWLFDVTDFSALPGQGIQCTIEGKRILVGNRKLMNERGISIAPHVDNFVIELEESAKTGILVACDDNLIGVVGIADPLKREAAVVVEGLVKMGVSPVMVTGDNWRTARAVAKELGIQDVRAEVMPAGKAEVIQNFQKDGSTVAMVGDGINDSPALAASDIGIAIGAGTDIAIEAADFVLMRNNLEDVITAIDLSRKTFNRIRLNYVFAMAYNVIAIPIAAGVFFPSLGVKLPPWAAGACMALSSVSVVCSSLLLRRYKRPRLTTILEITVE* 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30800528 30807117 - CsaV3_6G052820.1 Csa06g03896 535523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03896 1007 SFLD C1.7: P-type atpase like 644 933 - -
Csa06g03896 1007 CDD HMA 142 205 IPR006121 GO:0046872
Csa06g03896 1007 Gene3D - 56 128 - -
Csa06g03896 1007 SUPERFAMILY HAD-like 661 987 IPR036412 -
Csa06g03896 1007 Pfam haloacid dehalogenase-like hydrolase 658 895 - -
Csa06g03896 1007 ProSiteProfiles Heavy-metal-associated domain profile. 58 124 IPR006121 GO:0046872
Csa06g03896 1007 SUPERFAMILY HMA, heavy metal-associated domain 210 273 IPR036163 GO:0046872
Csa06g03896 1007 CDD P-type_ATPase_Cu-like 303 977 - -
Csa06g03896 1007 Pfam E1-E2 ATPase 443 640 - -
Csa06g03896 1007 SUPERFAMILY HMA, heavy metal-associated domain 53 126 IPR036163 GO:0046872
Csa06g03896 1007 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 739 962 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa06g03896 1007 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 415 691 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa06g03896 1007 TIGRFAM TIGR00003: copper ion binding protein 142 204 IPR006122 GO:0005507
Csa06g03896 1007 TIGRFAM TIGR00003: copper ion binding protein 59 122 IPR006122 GO:0005507
Csa06g03896 1007 ProSitePatterns Heavy-metal-associated domain. 63 93 IPR017969 GO:0046872
Csa06g03896 1007 Pfam Heavy-metal-associated domain 143 203 IPR006121 GO:0046872
Csa06g03896 1007 Pfam Heavy-metal-associated domain 61 121 IPR006121 GO:0046872
Csa06g03896 1007 ProSiteProfiles Heavy-metal-associated domain profile. 214 272 IPR006121 GO:0046872
Csa06g03896 1007 ProSitePatterns E1-E2 ATPases phosphorylation site. 664 670 IPR018303 -
Csa06g03896 1007 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 376 990 IPR027256 GO:0006812|GO:0016021|GO:0019829
Csa06g03896 1007 SFLD p-type atpase 644 933 IPR044492 -
Csa06g03896 1007 PANTHER ATP7, ISOFORM B 27 1000 - -
Csa06g03896 1007 SUPERFAMILY Calcium ATPase, transduction domain A 462 548 IPR008250 -
Csa06g03896 1007 Gene3D - 430 552 - -
Csa06g03896 1007 ProSitePatterns Heavy-metal-associated domain. 145 174 IPR017969 GO:0046872
Csa06g03896 1007 CDD HMA 60 123 IPR006121 GO:0046872
Csa06g03896 1007 Gene3D - 141 206 - -
Csa06g03896 1007 Gene3D - 629 938 IPR023214 -
Csa06g03896 1007 PRINTS P-type cation-transporting ATPase superfamily signature 498 512 - -
Csa06g03896 1007 PRINTS P-type cation-transporting ATPase superfamily signature 662 676 - -
Csa06g03896 1007 PRINTS P-type cation-transporting ATPase superfamily signature 806 817 - -
Csa06g03896 1007 PRINTS P-type cation-transporting ATPase superfamily signature 828 838 - -
Csa06g03896 1007 PRINTS P-type cation-transporting ATPase superfamily signature 881 900 - -
Csa06g03896 1007 PRINTS P-type cation-transporting ATPase superfamily signature 904 916 - -
Csa06g03896 1007 Gene3D - 669 761 IPR023299 GO:0000166
Csa06g03896 1007 Gene3D - 762 812 IPR023299 GO:0000166
Csa06g03896 1007 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 969 IPR023298 -
Csa06g03896 1007 ProSiteProfiles Heavy-metal-associated domain profile. 140 206 IPR006121 GO:0046872
Csa06g03896 1007 PRINTS H+-transporting ATPase (proton pump) signature 853 869 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa06g03896 1007 PRINTS H+-transporting ATPase (proton pump) signature 881 897 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa06g03896 1007 PRINTS H+-transporting ATPase (proton pump) signature 912 937 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa06g03896 1007 PANTHER HEAVY METAL P-TYPE ATPASE 27 1000 - -
Csa06g03896 1007 SUPERFAMILY HMA, heavy metal-associated domain 140 210 IPR036163 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00655 Csa-Chr2:4969020 Csa06g03896 Csa-Chr6:30800528 1.78E-75 dispersed
Csa04g02581 Csa-Chr4:25345754 Csa06g03896 Csa-Chr6:30800528 6.93E-115 dispersed
Csa05g00291 Csa-Chr5:1823864 Csa06g03896 Csa-Chr6:30800528 0 dispersed
Csa06g03896 Csa-Chr6:30800528 Csa03g03769 Csa-Chr3:33403928 1.42E-27 dispersed
Csa06g03896 Csa-Chr6:30800528 Csa01g02172 Csa-Chr1:18849770 7.25E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03896 K17686 - csv:101205642 1906.34