Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03933 ATGGAGAGCCATGGAGCCGGTAGTTATTTCGTTGACGAGAAGGCCGTTCTTGTTGAGAACATTTTCTTCGACTTCCTTAAAAGTTTTCGCATCAATGGGAACTCTGGTGACCCTTACTACGAGGCAGAGGTAGAAGCGATGATGGCTGGCGAATCTAACACCATGTTCATTGATTTTGCTCACCTCATGGGCTCCAATAATCTTCTTAACATTGCAATCGCCGACGAATATCTGAGGTTTGAACCATACCTGAAGAACGCTTGTAAGCGATTCGTAACGGAGCAGAATCCTTCTTTCATCGCTGACGATAACCCCTTCAAGGACATAAATGTTGCTTTCTTTAACATTCCTGTCTCTAAAAGGTTGAGAGAATTGACTACTGCGGAGATTGGGAAATTAGTATCCGTGACAGGAGTGGTGACGCGGACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTTAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTCGAACAACAATTTAAGTACACCGAGCCAACAATATGCATGAACCCAACCTGTTCGAATAGAACAAAGTGGGCACTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAGAGGAGATTCCAGCTGGCTCTCTTCCACGATCCTTGGATGTTATTCTCCGCCATGAAATGGTCGAACGAGCTAGGGCTGGAGACACGGTCATCTTCGCGGGTACAGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCGAAGAAACTCTGCAGTTGGACATGAAGGAATGAGGGGGTTACGAGCACTAGGAGTGAGGGACCTGTCCTATCGCCTGGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGCAGAAGGAATTTTGACATCAGAAATAGGAAAAAGGATGCGGATGAAGATAGCCAACAGTTTACCACTGGAGAGCTGGATGACGTTCAAAGGATGAGGAATACACCTGACTTTTTCAACAGACTTGTTGATAGCATTGCACCTGCAGTCTTTGGCCATCAAGACATCAAGCGAGCAATCTTGCTGATGCTGTTAGGTGGTGTCCACAAGTTAACTCATGAAGGCATTAACCTTCGAGGTGACATCAACGTCTGTATAGTAGGAGATCCAAGCTGTGCGAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGGGAATTTTGTATTGAGGCTGGTGCCTTGATGCTTGCCGACAATGGTATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACAAAAGCCGGAATACAGGCCACACTAAATGCTAGGACATCAATCCTCGCTGCTGCTAATCCTGCAGGAGGGCGGTATGACAAGTCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTCGTCTACGTGATGATAGATGATCCAGATGATCAAACAGACTACCATATCGCCCACCACATTGTGAGAGTACACCAGAAGCATGAAGATGCTCTTGCTCCTGCATTTACTACTGCAGAGTTGAAGCGTTACATTGCATATGCAAAAACTTTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAAGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCTGGATGTAGGGTTGCCTATCGCATGACAGTCAGGCAGCTTGAGGCATTAATAAGGTTGTCTGAAGCAATTGCTCGTAGTTATTTGGAGACTCTGGTTCAATCGCGTCATGTTCGTTTAGCAGTGACTTTACTGAAAACTTCAATAATCAGTGTGGAATCTAGCGAGATTGACCTATCTGAATTTCAAGAAGAAACTAATGGAGGTGGAGATGGTGATAATAATGCCGATGGGCCTAATGAGGTTGATGCTGAACCTAGGAACGGTGCAACAGAGGCAACTACTGGAAATAGTGAAATGGGTTCAGGTTCTGGAAATAGTCAACATAGGAAGGAGAAACTTTTCGTGAGCGATGAATATTTTCAGAGAGTTACCCAAGCCCTTGTGATGCGCCTCAGACAGCACGAAGAATATGTGAATCAAGAAGGACCTGGGCTGGCGGGAATGAGGCAGAGAGACTTAATTGAATGGTATGTGGATCAACAGAACGAAAGAAATAGCTATAGCTCCATGGAGGAGGCAAATAAAGAAATTAAATTAGTTAGAGCTATTATCCAGCATTTGATAGTGCAGGAAGGTCATTTGATAGTGGTAGATGATGGGAGGCCGGTAGATGGCGAGGTTGAAGGCGAATCATCATCAATAAGAATTAGAAATAACAGGATTCTAGTTGTGGCTCCTAATTATGTCGTCGATTGA 2520 44.29 MESHGAGSYFVDEKAVLVENIFFDFLKSFRINGNSGDPYYEAEVEAMMAGESNTMFIDFAHLMGSNNLLNIAIADEYLRFEPYLKNACKRFVTEQNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSEEIPAGSLPRSLDVILRHEMVERARAGDTVIFAGTVVVIPDILALASPGERAECRREASERRNSAVGHEGMRGLRALGVRDLSYRLAFIANSVQVLDGRRNFDIRNRKKDADEDSQQFTTGELDDVQRMRNTPDFFNRLVDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALAPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGCRVAYRMTVRQLEALIRLSEAIARSYLETLVQSRHVRLAVTLLKTSIISVESSEIDLSEFQEETNGGGDGDNNADGPNEVDAEPRNGATEATTGNSEMGSGSGNSQHRKEKLFVSDEYFQRVTQALVMRLRQHEEYVNQEGPGLAGMRQRDLIEWYVDQQNERNSYSSMEEANKEIKLVRAIIQHLIVQEGHLIVVDDGRPVDGEVEGESSSIRIRNNRILVVAPNYVVD* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31032535 31039758 + CsaV3_6G053180.1 Csa06g03933 535560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03933 839 SMART mcm 118 657 IPR031327 GO:0003677|GO:0005524|GO:0032508
Csa06g03933 839 SUPERFAMILY Nucleic acid-binding proteins 22 252 IPR012340 -
Csa06g03933 839 CDD MCM6 349 655 - -
Csa06g03933 839 Pfam MCM AAA-lid domain 571 656 IPR041562 -
Csa06g03933 839 Gene3D - 122 250 IPR012340 -
Csa06g03933 839 ProSiteProfiles MCM family domain profile. 346 552 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03933 839 Pfam MCM6 C-terminal winged-helix domain 720 838 IPR041024 -
Csa06g03933 839 ProSitePatterns MCM family signature. 455 463 IPR018525 GO:0003677|GO:0005524|GO:0006260
Csa06g03933 839 MobiDBLite consensus disorder prediction 697 716 - -
Csa06g03933 839 Gene3D - 10 118 - -
Csa06g03933 839 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 12 789 IPR031327 GO:0003677|GO:0005524|GO:0032508
Csa06g03933 839 Gene3D - 327 673 IPR027417 -
Csa06g03933 839 Gene3D - 149 200 - -
Csa06g03933 839 Gene3D - 716 839 - -
Csa06g03933 839 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 77 89 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Csa06g03933 839 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 119 131 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Csa06g03933 839 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 169 186 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Csa06g03933 839 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 222 233 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Csa06g03933 839 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 281 302 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Csa06g03933 839 MobiDBLite consensus disorder prediction 670 716 - -
Csa06g03933 839 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 12 789 - -
Csa06g03933 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 657 IPR027417 -
Csa06g03933 839 Pfam MCM P-loop domain 335 556 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03933 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 387 402 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03933 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 447 461 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03933 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 475 488 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03933 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 499 511 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03933 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 526 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa06g03933 839 Pfam MCM OB domain 122 250 IPR033762 -
Csa06g03933 839 Pfam MCM N-terminal domain 21 115 IPR027925 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03933 Csa-Chr6:31032535 Csa07g00021 Csa-Chr7:360064 6.41E-115 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03933 K02542 - csv:101219775 1623.6