Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00008 ATGATGAACAGAGCATTGCCGGAGATGTTGCACTGTTTGAACTCAACCGGGAATTGTTCTGATACTCTCAGTGTTCTTGAGAGGCAGAGAGCTCGTTTGAAATGGCAGCAAGATATGCTTTTCCAGCAGCCGTTAAATCAAAGCTGTTTCAGTAGAGCTGACTACGGCGGTGGATTTCCGCCGCCGGTTTCAGTTCCAGCGGATCATCTTACGGGGTTTCCAGGGTACATGAGTGGCGGCGGCGGCGTTGGTGGTGGATTATCTCATGTTGAGATGGTAATGGGAGCAGTGAAGCCTGACCCTGGGTTGGAAGATGGGTGGTCCGAAATGGGGAAGTTTGATCCTTCTTTGTTGTTGAATCCCACTGCTTGTGAGCTTAATTCTTCTCTCTCTCGAACCTCCAGCTGCCTGCCGGTGGTGGCTCCGACGGTGGCGGAGAAGATGGGGTCCATGGCTGGAAGAGAGAGCTTCAAGAAAAGGAAAGCTGAGAAAGCTCACAACACTACCACCACCGCCAACACCAATAACAACAAGGTGACGGTGGAAGAAGATGAGAACAACAACAGCAAGGAGAAGAGGATCAAAACAAGTTCAGAAGGAGAATTATCCAAAACCACAGATCAAAACGGCACCAAAAACAACTCAACCATCACAACCACAACAAACAACAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCTAAAGCTTCAGAAGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAATAAAATCACTGGAAAAGCTGGAATGCTAGATGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCTGTTAATCCAAGGTTGGACTTCAATGTCGATGATCTCTTCAACAAAGAGGTTTTCCCTCCATCTTGCACCGCAGCAAACTTCCCGTCAGTCGGCGGAATGTCATCGGAAATGACAGATCCTTCTTCCTACTTGCAATTCAATCCAAATAATCAACAAATGGACTCGTGTTGTGGGTTAGAAATGGGAATCAATACCTCCCATGTCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCAGAAAATTTCCTCGATTCATCTTGCCTCACGCAATTTCAACCCTCTTCAGGGTGGGATGTGGATTTGCAGAATATGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCACCCATATACAGGTTCAATTGAAGCAGGGAATATAAAGATGGAAATGTGA 1371 45.44 MMNRALPEMLHCLNSTGNCSDTLSVLERQRARLKWQQDMLFQQPLNQSCFSRADYGGGFPPPVSVPADHLTGFPGYMSGGGGVGGGLSHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNPTACELNSSLSRTSSCLPVVAPTVAEKMGSMAGRESFKKRKAEKAHNTTTTANTNNNKVTVEEDENNNSKEKRIKTSSEGELSKTTDQNGTKNNSTITTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFNKEVFPPSCTAANFPSVGGMSSEMTDPSSYLQFNPNNQQMDSCCGLEMGINTSHVALRRTISAPVSFPENFLDSSCLTQFQPSSGWDVDLQNMYNVGFDQGRSSNAFSSHPYTGSIEAGNIKMEM* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 185656 189146 + CsaV3_7G000080.1 Csa07g00008 535571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00008 456 CDD bHLH_AtBPE_like 245 330 - -
Csa07g00008 456 Gene3D - 252 326 IPR036638 GO:0046983
Csa07g00008 456 MobiDBLite consensus disorder prediction 183 200 - -
Csa07g00008 456 MobiDBLite consensus disorder prediction 201 229 - -
Csa07g00008 456 MobiDBLite consensus disorder prediction 149 262 - -
Csa07g00008 456 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 436 IPR024097 GO:0006355
Csa07g00008 456 Pfam Helix-loop-helix DNA-binding domain 259 306 IPR011598 GO:0046983
Csa07g00008 456 MobiDBLite consensus disorder prediction 152 166 - -
Csa07g00008 456 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 324 IPR036638 GO:0046983
Csa07g00008 456 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 20 436 - -
Csa07g00008 456 SMART finulus 261 311 IPR011598 GO:0046983
Csa07g00008 456 MobiDBLite consensus disorder prediction 230 262 - -
Csa07g00008 456 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 305 IPR011598 GO:0046983
Csa07g00008 456 MobiDBLite consensus disorder prediction 167 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02505 Csa-Chr4:24884098 Csa07g00008 Csa-Chr7:185656 1.85E-45 dispersed
Csa07g00008 Csa-Chr7:185656 Csa07g01563 Csa-Chr7:16047841 1.16E-48 dispersed
Csa01g00196 Csa-Chr1:1286661 Csa07g00008 Csa-Chr7:185656 1.13E-22 transposed
Csa03g01590 Csa-Chr3:11810548 Csa07g00008 Csa-Chr7:185656 2.64E-50 transposed
Csa03g03604 Csa-Chr3:32125102 Csa07g00008 Csa-Chr7:185656 9.30E-45 transposed
Csa06g02222 Csa-Chr6:20032486 Csa07g00008 Csa-Chr7:185656 3.26E-45 transposed
Csa02g01259 Csa-Chr2:12321166 Csa07g00008 Csa-Chr7:185656 5.05E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32230 PF00010 HLH 1.30E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00008 - - csv:101216907 852.432