Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g00008 | ATGATGAACAGAGCATTGCCGGAGATGTTGCACTGTTTGAACTCAACCGGGAATTGTTCTGATACTCTCAGTGTTCTTGAGAGGCAGAGAGCTCGTTTGAAATGGCAGCAAGATATGCTTTTCCAGCAGCCGTTAAATCAAAGCTGTTTCAGTAGAGCTGACTACGGCGGTGGATTTCCGCCGCCGGTTTCAGTTCCAGCGGATCATCTTACGGGGTTTCCAGGGTACATGAGTGGCGGCGGCGGCGTTGGTGGTGGATTATCTCATGTTGAGATGGTAATGGGAGCAGTGAAGCCTGACCCTGGGTTGGAAGATGGGTGGTCCGAAATGGGGAAGTTTGATCCTTCTTTGTTGTTGAATCCCACTGCTTGTGAGCTTAATTCTTCTCTCTCTCGAACCTCCAGCTGCCTGCCGGTGGTGGCTCCGACGGTGGCGGAGAAGATGGGGTCCATGGCTGGAAGAGAGAGCTTCAAGAAAAGGAAAGCTGAGAAAGCTCACAACACTACCACCACCGCCAACACCAATAACAACAAGGTGACGGTGGAAGAAGATGAGAACAACAACAGCAAGGAGAAGAGGATCAAAACAAGTTCAGAAGGAGAATTATCCAAAACCACAGATCAAAACGGCACCAAAAACAACTCAACCATCACAACCACAACAAACAACAACAGAGAAACTTCAGCTGATACCTCAAAAGAAAACTCTAAAGCTTCAGAAGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAATAAAATCACTGGAAAAGCTGGAATGCTAGATGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCTGTTAATCCAAGGTTGGACTTCAATGTCGATGATCTCTTCAACAAAGAGGTTTTCCCTCCATCTTGCACCGCAGCAAACTTCCCGTCAGTCGGCGGAATGTCATCGGAAATGACAGATCCTTCTTCCTACTTGCAATTCAATCCAAATAATCAACAAATGGACTCGTGTTGTGGGTTAGAAATGGGAATCAATACCTCCCATGTCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCAGAAAATTTCCTCGATTCATCTTGCCTCACGCAATTTCAACCCTCTTCAGGGTGGGATGTGGATTTGCAGAATATGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCACCCATATACAGGTTCAATTGAAGCAGGGAATATAAAGATGGAAATGTGA | 1371 | 45.44 | MMNRALPEMLHCLNSTGNCSDTLSVLERQRARLKWQQDMLFQQPLNQSCFSRADYGGGFPPPVSVPADHLTGFPGYMSGGGGVGGGLSHVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNPTACELNSSLSRTSSCLPVVAPTVAEKMGSMAGRESFKKRKAEKAHNTTTTANTNNNKVTVEEDENNNSKEKRIKTSSEGELSKTTDQNGTKNNSTITTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFNKEVFPPSCTAANFPSVGGMSSEMTDPSSYLQFNPNNQQMDSCCGLEMGINTSHVALRRTISAPVSFPENFLDSSCLTQFQPSSGWDVDLQNMYNVGFDQGRSSNAFSSHPYTGSIEAGNIKMEM* | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 185656 | 189146 | + | CsaV3_7G000080.1 | Csa07g00008 | 535571 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g00008 | 456 | CDD | bHLH_AtBPE_like | 245 | 330 | - | - | |
Csa07g00008 | 456 | Gene3D | - | 252 | 326 | IPR036638 | GO:0046983 | |
Csa07g00008 | 456 | MobiDBLite | consensus disorder prediction | 183 | 200 | - | - | |
Csa07g00008 | 456 | MobiDBLite | consensus disorder prediction | 201 | 229 | - | - | |
Csa07g00008 | 456 | MobiDBLite | consensus disorder prediction | 149 | 262 | - | - | |
Csa07g00008 | 456 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 20 | 436 | IPR024097 | GO:0006355 | |
Csa07g00008 | 456 | Pfam | Helix-loop-helix DNA-binding domain | 259 | 306 | IPR011598 | GO:0046983 | |
Csa07g00008 | 456 | MobiDBLite | consensus disorder prediction | 152 | 166 | - | - | |
Csa07g00008 | 456 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 253 | 324 | IPR036638 | GO:0046983 | |
Csa07g00008 | 456 | PANTHER | TRANSCRIPTION FACTOR BHLH63-LIKE | 20 | 436 | - | - | |
Csa07g00008 | 456 | SMART | finulus | 261 | 311 | IPR011598 | GO:0046983 | |
Csa07g00008 | 456 | MobiDBLite | consensus disorder prediction | 230 | 262 | - | - | |
Csa07g00008 | 456 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 255 | 305 | IPR011598 | GO:0046983 | |
Csa07g00008 | 456 | MobiDBLite | consensus disorder prediction | 167 | 182 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g02505 | Csa-Chr4:24884098 | Csa07g00008 | Csa-Chr7:185656 | 1.85E-45 | dispersed | |
Csa07g00008 | Csa-Chr7:185656 | Csa07g01563 | Csa-Chr7:16047841 | 1.16E-48 | dispersed | |
Csa01g00196 | Csa-Chr1:1286661 | Csa07g00008 | Csa-Chr7:185656 | 1.13E-22 | transposed | |
Csa03g01590 | Csa-Chr3:11810548 | Csa07g00008 | Csa-Chr7:185656 | 2.64E-50 | transposed | |
Csa03g03604 | Csa-Chr3:32125102 | Csa07g00008 | Csa-Chr7:185656 | 9.30E-45 | transposed | |
Csa06g02222 | Csa-Chr6:20032486 | Csa07g00008 | Csa-Chr7:185656 | 3.26E-45 | transposed | |
Csa02g01259 | Csa-Chr2:12321166 | Csa07g00008 | Csa-Chr7:185656 | 5.05E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32230 | PF00010 | HLH | 1.30E-06 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g00008 | - | - | csv:101216907 | 852.432 |