Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00018 ATGTGGGGGAGGGAGGGGATTCAAGTTTCAGATTTAGATTTGGGAATCGCCATGAGAATAGAGGAGAAGATGAGCGTTGCGGGGTTTTCTTGTTCTTCTTTTGTTGTAGTTATTGCTGTTTTGGTTATGGTTTTGAATGGAGTGGAGGTGTGTTATGGAGGTAAAACAGGACAGTTTATGAGGAAGGTTGAGAAAACTGTGGATATGCCTCTTGACAGTGATGTTTTTGCTGTTCCTCCTGGTTTTAATGCTCCCCAGCAGGTTCATATCACACAAGGAGATCATGAAGGGAAGGCAGTGATTGTTTCATGGGTCACTCCAAATAAACCAGGATCAAATGAAGTATTGTATTGGAGTGAGAAAAGCAAGGAAAAGAAACAGGCCTTTGGAAAAGTATATACTTACAAGTTCTATAATTACACTTCTGGTTACATTCATCACTGTACCATTAAAAACTTAAAGTATGACACCAAATACTACTATGAAATCGGAATTGGGTACTCTCCAAGAACATTCTGGTTTGTCACTCCTCCAGAAGTCGGTCCCGACGTTCCCTATACATTTGGTGTCATAGGGGATCTTGGCCAGAGTTTTGATTCAAATGTAACACTGACACACTACGAACGAAACCCGCATAAAGGAAAAGCAGTGCTATTTGTTGGAGATCTCTCTTATGCTGACAACTATCCATTCCATGACAATGTACGGTGGGATACATGGGGAAGATTCACAGAGAGAATCATCGCCTATCAGCCTTGGATATGGACTGCAGGAAATCATGAAATTGATTTTGTCCCAGAAATTGGTGAGACCGAGCCTTTCAAGCCATTTACTAACCGATATCATGTCCCTTATAAAGCATCTGGGAGCACAGCTCCTTTTTGGTACTCAATCAAGAGAGGTCCAGCATACATCATAGTCTTGGCTTCATATTCAGCTTATGGTAAATACACTCCTCAATACGAATGGCTTGAAGCAGAGCTACCGAAAGTTAACAGAAGTGAAACACCATGGTTAATTGTTCTTATGCATTCCCCGTGGTACAACAGCTACAACTATCACTACATGGAAGGAGAAACAATGCGAGTAATGTATGAGTCATGGTTTGTACAATACAAAGTTGACGTCGTCTTTGCTGGCCATGTCCATGCTTATGAAAGATCTGAAAGAATTTCAAATGTTGCATACAACATCGTGAATGGCCATTGTACTCCAGTGAAAGATCAATCTGCACCTGTATACATAACAATAGGTGATGGAGGAAACCTTGAAGGCCTAGCAACCAATATGACGGAGCCACAACCTGCGTACTCGGCGTATCGTGAAGCAAGCTTTGGGCATGCCATATTTGATATAATGAACAGAACTCATGCGTATTTCAGTTGGAGCAGGAATCAAGATGGATATGCAGTTGAAGCTGATACTCATTGGTTCTTGAACAGACACTGGCACCCGGTTGACGAGTCGTTGAGTGTGCAGAAATGA 1485 41.89 MWGREGIQVSDLDLGIAMRIEEKMSVAGFSCSSFVVVIAVLVMVLNGVEVCYGGKTGQFMRKVEKTVDMPLDSDVFAVPPGFNAPQQVHITQGDHEGKAVIVSWVTPNKPGSNEVLYWSEKSKEKKQAFGKVYTYKFYNYTSGYIHHCTIKNLKYDTKYYYEIGIGYSPRTFWFVTPPEVGPDVPYTFGVIGDLGQSFDSNVTLTHYERNPHKGKAVLFVGDLSYADNYPFHDNVRWDTWGRFTERIIAYQPWIWTAGNHEIDFVPEIGETEPFKPFTNRYHVPYKASGSTAPFWYSIKRGPAYIIVLASYSAYGKYTPQYEWLEAELPKVNRSETPWLIVLMHSPWYNSYNYHYMEGETMRVMYESWFVQYKVDVVFAGHVHAYERSERISNVAYNIVNGHCTPVKDQSAPVYITIGDGGNLEGLATNMTEPQPAYSAYREASFGHAIFDIMNRTHAYFSWSRNQDGYAVEADTHWFLNRHWHPVDESLSVQK* 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 338015 341834 - CsaV3_7G000180.1 Csa07g00018 535581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00018 494 Gene3D - 84 180 - -
Csa07g00018 494 Pfam Purple acid Phosphatase, N-terminal domain 85 167 IPR015914 GO:0003993|GO:0046872
Csa07g00018 494 PANTHER PURPLE ACID PHOSPHATASE 32 492 - -
Csa07g00018 494 SUPERFAMILY Metallo-dependent phosphatases 182 488 IPR029052 -
Csa07g00018 494 CDD MPP_PAPs 182 480 IPR041792 -
Csa07g00018 494 Pfam Iron/zinc purple acid phosphatase-like protein C 411 470 IPR025733 -
Csa07g00018 494 SUPERFAMILY Purple acid phosphatase, N-terminal domain 66 178 IPR008963 GO:0003993|GO:0046872
Csa07g00018 494 Gene3D - 181 490 IPR029052 -
Csa07g00018 494 PANTHER ACID PHOSPHATASE RELATED 32 492 IPR039331 GO:0003993
Csa07g00018 494 Pfam Calcineurin-like phosphoesterase 187 385 IPR004843 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00018 K22390 ACP7; acid phosphatase type 7 - csv:101211612 1048.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01792 Csa-Chr1:14825193 Csa07g00018 Csa-Chr7:338015 1.42E-180 dispersed
Csa04g01281 Csa-Chr4:12966351 Csa07g00018 Csa-Chr7:338015 1.32E-40 dispersed
Csa06g03292 Csa-Chr6:27605595 Csa07g00018 Csa-Chr7:338015 0 dispersed
Csa07g00018 Csa-Chr7:338015 Csa05g01643 Csa-Chr5:19501069 1.79E-29 dispersed
Csa03g01127 Csa-Chr3:8873742 Csa07g00018 Csa-Chr7:338015 6.27E-70 transposed
Csa02g02096 Csa-Chr2:19060289 Csa07g00018 Csa-Chr7:338015 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g10 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1174 Cone8ag1220 . . . Csa07g00018 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00018 Csa_Chr07 FPKM 13.960412 15.918474 13.874213 14.55631 13.78075 13.554282 12.837605 18.204128 16.505781 18.452951