Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00021 ATGGCCTCCGATTCTTCTCCAGTTAACTTCAATACAGGTCCTTCCTCGCCTGATGATTCATTCTCTAGTCCCATCGGAAACACCGTCTCTTCCTCTGGCGACGGTTATCGCCGTCGAAGCCGTCGCCGGTCATCTACTCCTTCGGAAATGGCTACGCCGCCGCGTCAACGACCCCGATTGGTCTCGTCGGAAACCACCCCGACTGCTAAGGAGCCGCGCTCTCGCCGGCGAGGCGGGGGGCGGGGGGCGTCTGGTAGTGACGTGCCTCCGGTGGCTGCTACACCTTCTTCGACGGATGATATTCCGCCATCGACGGAACCTGGCGACGGCGATGACATGGATGAGGATCATCCGACCTTTGTATGGGGGACGAACATAAGTGTTGATGATGTAAAGGGAGCTATCATACGGTTTTTGAGGCATTTCCGCGATCGTCAGGCGTCGCAGTCCGAGGGGGATTTTCATACTGAGGGAAAATACGCGGAGGTAATCAAGAGGGTTCTTGAAAATGAAGGGGATTCGCTTGATGTGGACGCGCAGGATTTGTTCAATTACGATGCGGATTTATATACGAAGATGGTGAGGTACCCTCTTGAGGTTCTGGCAATATTTGATATTGTTCTGATGGAAATGGTACCCCAAATCAACCCATTGTTTGAAAAGCACATTCAAACTCGGATATTCAATCTCAGAACTTCTACTTCAATGAGAAATCTGAACCCATCTGACATTGAGAGGATGGTGTCACTGAAGGGGATGATTATACGGTGTAGTTCAATAATTCCCGAGATCAGGGAGGCAATATTTAGATGTCTGGTATGCGGATACTACACTGATCCGGTATCTATTGAAAGAGGACAAATAACTGAGCCCACTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAATTCCATGACATTGGTTCATAATCGATGCAGGTTTGCCGATAAGCAGATTGTGCGGCTTCAGGAGACTCCTGATGAGATACCTGAAGGAGGGACGCCTCATACCGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTACAGGGCCATGAGTGTGAGAGTTGGGCCAACCCAGAGAACTGTAAAATCATTGTTCAAGACTTATATTGACTGTCTTCATATAAAGAAGACCGATAAGTCAAGAATGGTGGCAGATCTGACTGAAGCTGAGAACCGGTTGAGTAGTAATGTGGATGATCTGTCATTTGATGAAGAGAAGGTGGAAGAGTTGAAAGAACTCTCTAAAAAGCCTGATATATATGACAGACTGACCAGGTCTTTGGCTCCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAATGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTCGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATATATACATAAACTATCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACAGCTTACGTCTCCAAAGATCCTGAAACAGGCGAAACAGTACTGGAGAGTGGAGCCTTGGTTTTGAGTGACAGAGGCATTTGCTGCATTGATGAATTTGATAAAATGTCTGAAAATGCAAGGAGCATGTTGCACGAGGTGATGGAGCAACAAACTGTTTCAATAGCGAAGGCTGGGATTATTGCTTCTCTTAATGCCAGGACTTCAGTATTAGCTTGTGCAAATCCAAGTGGTTCACGTTATAATCCTCGCTTATCTGTAATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATCTAATTTTGGATAAAGCTGATGAGCAAACAGATAGGCGCCTAGCTAAGCATATTGTCGCACTGCACTTTGACAACCCTGAGGGCATTGAGCAGGATTTCTTGGACCTTCATACTTTGACTTCATATGTCAGCTATGCTCGGAAAAACATTCACCCAAAATTGTCAGACGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAGGAGAAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTCATTACAGCAACCCCCAGACAGATTGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATACGTTTCTCAGAATGGGTTGAAAAGGGTGACGTTCTCGAATCATTCCGGCTTCTAGAAGTTGCGATGCAACAATCTGCAACAGATCATTCTACAGGAACTATTGACATGGATTTGATCACCACGGGAGTATCGAGCAGCGAAAGGTTACGAAGGGAGAGTTTATTATCTGCAACTCGCAACATTATTATGGAGAAAATGCAGCTTGGAGGACCCTCCATGCGCTTGTCAGAGTTGTTGGATGAGCTGAAGAAGAAGAATCCTGAAAATGAAGTCCATCTCAACAACCTTAGAAACACAGTATCAACGCTTGCAAGTGAAGGATTTGTAGAGATCCGTGGGGATAACATTAAGAGAATATGA 2535 45.84 MASDSSPVNFNTGPSSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEMATPPRQRPRLVSSETTPTAKEPRSRRRGGGRGASGSDVPPVAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYAEVIKRVLENEGDSLDVDAQDLFNYDADLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVSIERGQITEPTICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMVADLTEAENRLSSNVDDLSFDEEKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVALHFDNPEGIEQDFLDLHTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLESFRLLEVAMQQSATDHSTGTIDMDLITTGVSSSERLRRESLLSATRNIIMEKMQLGGPSMRLSELLDELKKKNPENEVHLNNLRNTVSTLASEGFVEIRGDNIKRI* 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 360064 365832 - CsaV3_7G000210.1 Csa07g00021 535584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00021 844 SMART mcm 232 748 IPR031327 GO:0003677|GO:0005524|GO:0032508
Csa07g00021 844 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 92 843 IPR031327 GO:0003677|GO:0005524|GO:0032508
Csa07g00021 844 ProSitePatterns MCM family signature. 543 551 IPR018525 GO:0003677|GO:0005524|GO:0006260
Csa07g00021 844 MobiDBLite consensus disorder prediction 46 68 - -
Csa07g00021 844 Coils Coil 804 824 - -
Csa07g00021 844 Pfam MCM AAA-lid domain 660 746 IPR041562 -
Csa07g00021 844 ProSiteProfiles MCM family domain profile. 434 640 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00021 844 Pfam MCM P-loop domain 422 644 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00021 844 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 258 271 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Csa07g00021 844 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 309 321 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Csa07g00021 844 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 450 461 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Csa07g00021 844 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 596 613 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Csa07g00021 844 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 748 757 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Csa07g00021 844 Gene3D - 753 842 IPR036388 -
Csa07g00021 844 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 92 843 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Csa07g00021 844 MobiDBLite consensus disorder prediction 1 120 - -
Csa07g00021 844 Gene3D - 412 752 IPR027417 -
Csa07g00021 844 Gene3D - 236 375 IPR012340 -
Csa07g00021 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 760 IPR027417 -
Csa07g00021 844 Gene3D - 125 231 - -
Csa07g00021 844 Pfam MCM N-terminal domain 134 232 IPR027925 -
Csa07g00021 844 CDD MCM4 437 746 - -
Csa07g00021 844 Pfam MCM OB domain 236 365 IPR033762 -
Csa07g00021 844 Gene3D - 263 315 - -
Csa07g00021 844 SUPERFAMILY Nucleic acid-binding proteins 152 386 IPR012340 -
Csa07g00021 844 PRINTS Mini-chromosome maintenance (MCM) protein family signature 475 490 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00021 844 PRINTS Mini-chromosome maintenance (MCM) protein family signature 535 549 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00021 844 PRINTS Mini-chromosome maintenance (MCM) protein family signature 563 576 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00021 844 PRINTS Mini-chromosome maintenance (MCM) protein family signature 587 599 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00021 844 PRINTS Mini-chromosome maintenance (MCM) protein family signature 614 622 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g00021 844 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00021 K02212 MCM4, CDC54; DNA replication licensing factor MCM4 [EC:5.6.2.3] - csv:101211850 1612.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02982 Csa-Chr3:28424382 Csa07g00021 Csa-Chr7:360064 1.18E-102 dispersed
Csa03g03246 Csa-Chr3:29769169 Csa07g00021 Csa-Chr7:360064 6.06E-94 dispersed
Csa06g03933 Csa-Chr6:31032535 Csa07g00021 Csa-Chr7:360064 6.41E-115 dispersed
Csa07g00021 Csa-Chr7:360064 Csa07g01905 Csa-Chr7:18948862 9.43E-114 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g15 . . . . . . . . Cmo19g00696 . . . . . . Cpe04g00111 Cpe15g00556 . . . . . . . Cla02g00495 Cam02g0506 Cec02g0506 Cco02g0511 Clacu02g0508 Cmu02g0504 Cre02g0837 . . Cone3ag1220 . . Csa07g00021 . Cme01g01361 . . . . . . . . . . . . Cma19g00684 . Car19g00528 . . . . . . . . . . . . . . . . Lsi11g01129 . Chy01g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02770 . 107 802 Core DNA Replication Machinery Family AT4G14700 65.9 1.7e-269 925.6
Csa06g03859 . 83 557 Core DNA Replication Machinery Family AT4G14700 62.1 9.4e-172 600.9
Csa03g02770 . 107 802 Core DNA Replication Machinery Family AT4G12620 67.8 4.4e-278 954.1
Csa06g03859 . 83 557 Core DNA Replication Machinery Family AT4G12620 64.7 3.2e-180 629.0
Csa02g01983 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.2 6.3e-141 497.3
Csa05g00861 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.2 7.7e-157 550.4
Csa06g00062 . 3 417 Core DNA Replication Machinery Family AT4G29910 57.1 1.5e-131 466.8
Csa02g00864 . 1 274 Core DNA Replication Machinery Family AT1G26840 63.6 8.3e-91 330.5
Csa07g01193 . 4 799 Core DNA Replication Machinery Family AT1G79150 59.1 2.3e-245 845.5
Csa03g02982 . 12 939 Core DNA Replication Machinery Family AT1G44900 75.7 0.0e+00 1347.4
Csa06g03777 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.5 1.4e-267 918.7
Csa07g00021 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.2 0.0e+00 1154.0
Csa02g00251 . 1 736 Core DNA Replication Machinery Family AT2G07690 78.5 0.0e+00 1115.9
Csa06g03933 . 7 840 Core DNA Replication Machinery Family AT5G44635 71.7 0.0e+00 1189.5
Csa07g01905 . 4 722 Core DNA Replication Machinery Family AT4G02060 84.7 0.0e+00 1214.5
Csa06g01433 . 38 504 Core DNA Replication Machinery Family AT2G29680 61.5 4.2e-162 568.2
Csa06g01433 . 5 465 Core DNA Replication Machinery Family AT1G07270 55.8 2.3e-138 489.2
Csa07g01526 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-256 882.5
Csa03g03246 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.1 0.0e+00 1098.2
Csa07g00576 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.6 5.4e-287 983.4
Csa02g01390 . 18 420 Core DNA Replication Machinery Family AT2G20980 55.9 1.6e-116 416.4
Csa04g01776 . 7 180 Core DNA Replication Machinery Family AT1G77320 71.3 8.0e-72 269.2
Csa02g00004 . 1 141 Core DNA Replication Machinery Family AT1G77320 56.0 6.0e-43 173.3
Csa04g02777 . 2 146 Core DNA Replication Machinery Family AT1G77320 52.4 4.4e-38 157.1
Csa07g02169 . 1 201 Core DNA Replication Machinery Family AT1G80190 68.5 1.1e-76 283.1
Csa04g00968 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.7 1.8e-60 228.8
Csa06g00183 . 5 190 Core DNA Replication Machinery Family AT1G19080 67.2 5.9e-69 257.3
Csa06g00183 . 5 190 Core DNA Replication Machinery Family AT3G55490 67.2 5.9e-69 257.3
Csa03g00879 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.7 8.2e-50 193.7
Csa02g01434 . 1 1545 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1746.1
Csa01g00615 . 26 649 Core DNA Replication Machinery Family AT1G67630 61.9 1.5e-217 752.7
Csa06g00817 . 20 466 Core DNA Replication Machinery Family AT1G67320 64.5 3.2e-183 638.3
Csa05g03138 . 7 451 Core DNA Replication Machinery Family AT5G41880 65.8 1.3e-178 622.9
Csa06g02735 . 1 1091 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1726.5
Csa03g03577 . 1 438 Core DNA Replication Machinery Family AT2G42120 74.7 2.1e-202 701.8
Csa06g00817 . 20 466 Core DNA Replication Machinery Family AT1G67320 64.5 3.2e-183 638.3
Csa05g00569 . 1 126 Core DNA Replication Machinery Family AT1G09815 61.1 2.3e-37 151.8
Csa06g01291 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.2 0.0e+00 2980.7
Csa06g01291 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.6 0.0e+00 2940.6
Csa01g02219 . 7 486 Core DNA Replication Machinery Family AT5G22110 68.7 6.8e-189 657.1
Csa06g02480 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.8 6.4e-310 1060.1
Csa03g00353 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.7 6.0e-173 603.6
Csa04g02134 . 1 355 Core DNA Replication Machinery Family AT5G27740 84.2 5.6e-177 617.1
Csa04g01779 . 1 331 Core DNA Replication Machinery Family AT1G21690 81.9 9.9e-152 533.1
Csa06g02139 . 1 364 Core DNA Replication Machinery Family AT1G77470 76.1 4.8e-155 544.3
Csa02g00027 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.0 1.0e-250 862.8
Csa03g00107 . 32 705 Core DNA Replication Machinery Family AT2G06510 51.0 3.7e-200 694.9
Csa01g00297 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 8.1e-245 843.2
Csa03g00107 . 10 814 Core DNA Replication Machinery Family AT5G45400 52.4 1.7e-235 812.8
Csa01g00297 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 1.4e-239 825.9
Csa03g00107 . 5 800 Core DNA Replication Machinery Family AT4G19130 54.2 1.3e-229 793.1
Csa01g02708 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.2 4.8e-188 654.1
Csa03g01027 . 1 1103 Core DNA Replication Machinery Family AT1G08840 53.0 1.6e-301 1032.3
Csa04g00346 . 1 298 Core DNA Replication Machinery Family AT2G25100 67.8 1.5e-116 416.0
Csa06g01233 . 1 802 Core DNA Replication Machinery Family AT1G08130 66.7 1.3e-298 1022.3
Csa06g01233 . 201 802 Core DNA Replication Machinery Family AT1G49250 69.2 3.1e-242 834.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007588 1 2 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00021 Csa_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0