Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa07g00021 | ATGGCCTCCGATTCTTCTCCAGTTAACTTCAATACAGGTCCTTCCTCGCCTGATGATTCATTCTCTAGTCCCATCGGAAACACCGTCTCTTCCTCTGGCGACGGTTATCGCCGTCGAAGCCGTCGCCGGTCATCTACTCCTTCGGAAATGGCTACGCCGCCGCGTCAACGACCCCGATTGGTCTCGTCGGAAACCACCCCGACTGCTAAGGAGCCGCGCTCTCGCCGGCGAGGCGGGGGGCGGGGGGCGTCTGGTAGTGACGTGCCTCCGGTGGCTGCTACACCTTCTTCGACGGATGATATTCCGCCATCGACGGAACCTGGCGACGGCGATGACATGGATGAGGATCATCCGACCTTTGTATGGGGGACGAACATAAGTGTTGATGATGTAAAGGGAGCTATCATACGGTTTTTGAGGCATTTCCGCGATCGTCAGGCGTCGCAGTCCGAGGGGGATTTTCATACTGAGGGAAAATACGCGGAGGTAATCAAGAGGGTTCTTGAAAATGAAGGGGATTCGCTTGATGTGGACGCGCAGGATTTGTTCAATTACGATGCGGATTTATATACGAAGATGGTGAGGTACCCTCTTGAGGTTCTGGCAATATTTGATATTGTTCTGATGGAAATGGTACCCCAAATCAACCCATTGTTTGAAAAGCACATTCAAACTCGGATATTCAATCTCAGAACTTCTACTTCAATGAGAAATCTGAACCCATCTGACATTGAGAGGATGGTGTCACTGAAGGGGATGATTATACGGTGTAGTTCAATAATTCCCGAGATCAGGGAGGCAATATTTAGATGTCTGGTATGCGGATACTACACTGATCCGGTATCTATTGAAAGAGGACAAATAACTGAGCCCACTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAATTCCATGACATTGGTTCATAATCGATGCAGGTTTGCCGATAAGCAGATTGTGCGGCTTCAGGAGACTCCTGATGAGATACCTGAAGGAGGGACGCCTCATACCGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTACAGGGCCATGAGTGTGAGAGTTGGGCCAACCCAGAGAACTGTAAAATCATTGTTCAAGACTTATATTGACTGTCTTCATATAAAGAAGACCGATAAGTCAAGAATGGTGGCAGATCTGACTGAAGCTGAGAACCGGTTGAGTAGTAATGTGGATGATCTGTCATTTGATGAAGAGAAGGTGGAAGAGTTGAAAGAACTCTCTAAAAAGCCTGATATATATGACAGACTGACCAGGTCTTTGGCTCCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAATGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTCGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATATATACATAAACTATCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACAGCTTACGTCTCCAAAGATCCTGAAACAGGCGAAACAGTACTGGAGAGTGGAGCCTTGGTTTTGAGTGACAGAGGCATTTGCTGCATTGATGAATTTGATAAAATGTCTGAAAATGCAAGGAGCATGTTGCACGAGGTGATGGAGCAACAAACTGTTTCAATAGCGAAGGCTGGGATTATTGCTTCTCTTAATGCCAGGACTTCAGTATTAGCTTGTGCAAATCCAAGTGGTTCACGTTATAATCCTCGCTTATCTGTAATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATCTAATTTTGGATAAAGCTGATGAGCAAACAGATAGGCGCCTAGCTAAGCATATTGTCGCACTGCACTTTGACAACCCTGAGGGCATTGAGCAGGATTTCTTGGACCTTCATACTTTGACTTCATATGTCAGCTATGCTCGGAAAAACATTCACCCAAAATTGTCAGACGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAGGAGAAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTCATTACAGCAACCCCCAGACAGATTGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATACGTTTCTCAGAATGGGTTGAAAAGGGTGACGTTCTCGAATCATTCCGGCTTCTAGAAGTTGCGATGCAACAATCTGCAACAGATCATTCTACAGGAACTATTGACATGGATTTGATCACCACGGGAGTATCGAGCAGCGAAAGGTTACGAAGGGAGAGTTTATTATCTGCAACTCGCAACATTATTATGGAGAAAATGCAGCTTGGAGGACCCTCCATGCGCTTGTCAGAGTTGTTGGATGAGCTGAAGAAGAAGAATCCTGAAAATGAAGTCCATCTCAACAACCTTAGAAACACAGTATCAACGCTTGCAAGTGAAGGATTTGTAGAGATCCGTGGGGATAACATTAAGAGAATATGA | 2535 | 45.84 | MASDSSPVNFNTGPSSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEMATPPRQRPRLVSSETTPTAKEPRSRRRGGGRGASGSDVPPVAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYAEVIKRVLENEGDSLDVDAQDLFNYDADLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVSIERGQITEPTICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMVADLTEAENRLSSNVDDLSFDEEKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVALHFDNPEGIEQDFLDLHTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLESFRLLEVAMQQSATDHSTGTIDMDLITTGVSSSERLRRESLLSATRNIIMEKMQLGGPSMRLSELLDELKKKNPENEVHLNNLRNTVSTLASEGFVEIRGDNIKRI* | 845 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 360064 | 365832 | - | CsaV3_7G000210.1 | Csa07g00021 | 535584 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa07g00021 | 844 | SMART | mcm | 232 | 748 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa07g00021 | 844 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 92 | 843 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa07g00021 | 844 | ProSitePatterns | MCM family signature. | 543 | 551 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Csa07g00021 | 844 | MobiDBLite | consensus disorder prediction | 46 | 68 | - | - | |
| Csa07g00021 | 844 | Coils | Coil | 804 | 824 | - | - | |
| Csa07g00021 | 844 | Pfam | MCM AAA-lid domain | 660 | 746 | IPR041562 | - | |
| Csa07g00021 | 844 | ProSiteProfiles | MCM family domain profile. | 434 | 640 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa07g00021 | 844 | Pfam | MCM P-loop domain | 422 | 644 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa07g00021 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 258 | 271 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Csa07g00021 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 309 | 321 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Csa07g00021 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 450 | 461 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Csa07g00021 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 596 | 613 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Csa07g00021 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 748 | 757 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Csa07g00021 | 844 | Gene3D | - | 753 | 842 | IPR036388 | - | |
| Csa07g00021 | 844 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM4 | 92 | 843 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Csa07g00021 | 844 | MobiDBLite | consensus disorder prediction | 1 | 120 | - | - | |
| Csa07g00021 | 844 | Gene3D | - | 412 | 752 | IPR027417 | - | |
| Csa07g00021 | 844 | Gene3D | - | 236 | 375 | IPR012340 | - | |
| Csa07g00021 | 844 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 445 | 760 | IPR027417 | - | |
| Csa07g00021 | 844 | Gene3D | - | 125 | 231 | - | - | |
| Csa07g00021 | 844 | Pfam | MCM N-terminal domain | 134 | 232 | IPR027925 | - | |
| Csa07g00021 | 844 | CDD | MCM4 | 437 | 746 | - | - | |
| Csa07g00021 | 844 | Pfam | MCM OB domain | 236 | 365 | IPR033762 | - | |
| Csa07g00021 | 844 | Gene3D | - | 263 | 315 | - | - | |
| Csa07g00021 | 844 | SUPERFAMILY | Nucleic acid-binding proteins | 152 | 386 | IPR012340 | - | |
| Csa07g00021 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 475 | 490 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa07g00021 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 535 | 549 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa07g00021 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 563 | 576 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa07g00021 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 587 | 599 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa07g00021 | 844 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 614 | 622 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Csa07g00021 | 844 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g02982 | Csa-Chr3:28424382 | Csa07g00021 | Csa-Chr7:360064 | 1.18E-102 | dispersed | |
| Csa03g03246 | Csa-Chr3:29769169 | Csa07g00021 | Csa-Chr7:360064 | 6.06E-94 | dispersed | |
| Csa06g03933 | Csa-Chr6:31032535 | Csa07g00021 | Csa-Chr7:360064 | 6.41E-115 | dispersed | |
| Csa07g00021 | Csa-Chr7:360064 | Csa07g01905 | Csa-Chr7:18948862 | 9.43E-114 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa07g00021 | K02212 | - | csv:101211850 | 1612.82 |