Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00027 ATGAAGATCCGTTGCGATGTTTGTGATCAAACTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGCCTGTGATCTCCATGTTCATCGTGCTAATAAGCTCGCTGGTAAACACTCACGATTCTCTTTACTTCAACCCATCAAGAAGGATTCTCCTCCTTGCGATATCTGTCAGGAACGGAGAGCGCTTGTATTCTGTCAACAAGATAGGGCAATTCTTTGTAGAGAATGCGACATTTCGATTCACGAAACCAACGAACATACACAAAAGCACAATCGGTTTCTTCTAACAGGTGTGAAGCTTTCTTCAACTTGTTTTTCCTATCAAACATCTTCATCCTCCAATGCCTGTGATATCGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCGCCAAAAGATCAACAAATCTCAAGTACTTCACATTCCGCTGAAAAAGCTACTCCCCCATCCACAAGCAATAATTATCTGGTCGATCAAGACGGTCAAGCATTAAGCGACGGCGGTTCGTTCTCGACGAGCAGCATATCGGAGTATTTGGAAACATTACCGGGATGGTGTGTGGAGGAGTTTCTAGATCCATCCGCCGCCGCCGCTGCTGCTGCTGCTGCCGCCAATCGTTTCTGTAAGATTAAAAATGGTGAAATTTTGGGATTTGGGAATGGAAATCTGGAAAGGGAAGAGGAGGAATCAGTAAGGTATGTGAAGAAGATGAGTTGGGAAGTACTTTTAGGTAAAAATTGTGAGATTATTGGTAGAAAATGGTGGAATGGAGTAGAAATCTCCATGAAAAGTTGTAAAGATGAAAAAATAGATGAAGATGAACAAACGCAAACTAACTTTTTTGTTTTTATTTTTTGGTTTGTTGTTGATGATGAGATTTGCATATTAGTTTTTACCTCAACCCATTGCTCACTCTCTTTTGTATTTTTGCCATTACAATTTCCTCTTTTCTTTAAAAAGAAAGAAGAAAAATATAAAAAAAAAGTGGTTTGGATGAGAATGGAATAA 1050 40.19 MKIRCDVCDQTEASVFCYADEAALCHACDLHVHRANKLAGKHSRFSLLQPIKKDSPPCDICQERRALVFCQQDRAILCRECDISIHETNEHTQKHNRFLLTGVKLSSTCFSYQTSSSSNACDIDAAMDVKTGSSNACSKRPKMAPKDQQISSTSHSAEKATPPSTSNNYLVDQDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAAAAAAAAANRFCKIKNGEILGFGNGNLEREEEESVRYVKKMSWEVLLGKNCEIIGRKWWNGVEISMKSCKDEKIDEDEQTQTNFFVFIFWFVVDDEICILVFTSTHCSLSFVFLPLQFPLFFKKKEEKYKKKVVWMRME* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 395757 397689 + CsaV3_7G000270.1 Csa07g00027 535590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00027 349 MobiDBLite consensus disorder prediction 134 172 - -
Csa07g00027 349 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Csa07g00027 349 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Csa07g00027 349 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa07g00027 349 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 216 - -
Csa07g00027 349 CDD Bbox1_BBX-like 57 100 - -
Csa07g00027 349 MobiDBLite consensus disorder prediction 145 172 - -
Csa07g00027 349 CDD Bbox1_BBX-like 5 47 - -
Csa07g00027 349 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 216 - -
Csa07g00027 349 SMART bboxneu5 53 100 IPR000315 GO:0008270
Csa07g00027 349 SMART bboxneu5 4 47 IPR000315 GO:0008270
Csa07g00027 349 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Csa07g00027 349 Gene3D Classic Zinc Finger 1 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00027 - - - csv:101212584 432.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01300 Csa07g00027 CCT
Csa02g01300 Csa07g00027 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00679 Csa-Chr6:5555910 Csa07g00027 Csa-Chr7:395757 2.02E-33 dispersed
Csa06g03304 Csa-Chr6:27677901 Csa07g00027 Csa-Chr7:395757 6.19E-21 dispersed
Csa07g00027 Csa-Chr7:395757 Csa07g00509 Csa-Chr7:3665194 6.67E-19 dispersed
Csa02g01300 Csa-Chr2:12644521 Csa07g00027 Csa-Chr7:395757 2.33E-57 wgd
Csa02g02104 Csa-Chr2:19152113 Csa07g00027 Csa-Chr7:395757 1.93E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02445 . 6 338 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 1.4e-42 170.6
Csa02g02445 . 1 338 C2C2-CO-like Transcription Factor Family AT5G24930 61.0 8.2e-83 304.3
Csa01g02115 CCT 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.2e-57 220.7
Csa01g02115 CCT 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 52.2 4.3e-68 255.4
Csa02g02445 . 2 338 C2C2-CO-like Transcription Factor Family AT5G57660 50.3 3.0e-53 206.1
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.2e-90 328.9
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 3.5e-89 325.5
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 1.5e-87 320.1
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.6e-86 315.5
Csa06g00975 CCT 1 414 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 1.5e-87 320.1
Csa07g00235 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.6e-86 315.5
Csa07g00027 CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 53.7 3.5e-48 189.1
Csa02g01300 CCT,ECH 1 173 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 6.2e-45 178.3
Csa04g00821 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.2 1.4e-78 290.0
Csa04g00581 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 60.5 2.6e-55 211.8
Csa06g03304 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.1 2.2e-49 192.2
Csa04g00581 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 3.0e-57 218.4
Csa06g03304 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.0 6.7e-49 190.7
Csa07g00027 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 54.8 3.8e-52 201.8
Csa02g02104 . 1 220 C2C2-CO-like Transcription Factor Family AT4G39070 50.7 1.8e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32232 PF00643 zf-B_box 1.40E-06 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00027 Csa_Chr07 FPKM 18.529659 20.393353 24.237581 23.961643 26.498703 25.569719 26.626333 31.243004 30.377916 33.266895