Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00027 ATGAAGATCCGTTGCGATGTTTGTGATCAAACTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGCCTGTGATCTCCATGTTCATCGTGCTAATAAGCTCGCTGGTAAACACTCACGATTCTCTTTACTTCAACCCATCAAGAAGGATTCTCCTCCTTGCGATATCTGTCAGGAACGGAGAGCGCTTGTATTCTGTCAACAAGATAGGGCAATTCTTTGTAGAGAATGCGACATTTCGATTCACGAAACCAACGAACATACACAAAAGCACAATCGGTTTCTTCTAACAGGTGTGAAGCTTTCTTCAACTTGTTTTTCCTATCAAACATCTTCATCCTCCAATGCCTGTGATATCGATGCCGCCATGGATGTTAAAACTGGAAGCTCCAACGCTTGCAGCAAAAGACCTAAAATGGCGCCAAAAGATCAACAAATCTCAAGTACTTCACATTCCGCTGAAAAAGCTACTCCCCCATCCACAAGCAATAATTATCTGGTCGATCAAGACGGTCAAGCATTAAGCGACGGCGGTTCGTTCTCGACGAGCAGCATATCGGAGTATTTGGAAACATTACCGGGATGGTGTGTGGAGGAGTTTCTAGATCCATCCGCCGCCGCCGCTGCTGCTGCTGCTGCCGCCAATCGTTTCTGTAAGATTAAAAATGGTGAAATTTTGGGATTTGGGAATGGAAATCTGGAAAGGGAAGAGGAGGAATCAGTAAGGTATGTGAAGAAGATGAGTTGGGAAGTACTTTTAGGTAAAAATTGTGAGATTATTGGTAGAAAATGGTGGAATGGAGTAGAAATCTCCATGAAAAGTTGTAAAGATGAAAAAATAGATGAAGATGAACAAACGCAAACTAACTTTTTTGTTTTTATTTTTTGGTTTGTTGTTGATGATGAGATTTGCATATTAGTTTTTACCTCAACCCATTGCTCACTCTCTTTTGTATTTTTGCCATTACAATTTCCTCTTTTCTTTAAAAAGAAAGAAGAAAAATATAAAAAAAAAGTGGTTTGGATGAGAATGGAATAA 1050 40.19 MKIRCDVCDQTEASVFCYADEAALCHACDLHVHRANKLAGKHSRFSLLQPIKKDSPPCDICQERRALVFCQQDRAILCRECDISIHETNEHTQKHNRFLLTGVKLSSTCFSYQTSSSSNACDIDAAMDVKTGSSNACSKRPKMAPKDQQISSTSHSAEKATPPSTSNNYLVDQDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAAAAAAAAANRFCKIKNGEILGFGNGNLEREEEESVRYVKKMSWEVLLGKNCEIIGRKWWNGVEISMKSCKDEKIDEDEQTQTNFFVFIFWFVVDDEICILVFTSTHCSLSFVFLPLQFPLFFKKKEEKYKKKVVWMRME* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 395757 397689 + CsaV3_7G000270.1 Csa07g00027 535590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00027 349 MobiDBLite consensus disorder prediction 134 172 - -
Csa07g00027 349 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Csa07g00027 349 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Csa07g00027 349 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa07g00027 349 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 216 - -
Csa07g00027 349 CDD Bbox1_BBX-like 57 100 - -
Csa07g00027 349 MobiDBLite consensus disorder prediction 145 172 - -
Csa07g00027 349 CDD Bbox1_BBX-like 5 47 - -
Csa07g00027 349 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 216 - -
Csa07g00027 349 SMART bboxneu5 53 100 IPR000315 GO:0008270
Csa07g00027 349 SMART bboxneu5 4 47 IPR000315 GO:0008270
Csa07g00027 349 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Csa07g00027 349 Gene3D Classic Zinc Finger 1 100 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01300 Csa07g00027 CCT
Csa02g01300 Csa07g00027 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00679 Csa-Chr6:5555910 Csa07g00027 Csa-Chr7:395757 2.02E-33 dispersed
Csa06g03304 Csa-Chr6:27677901 Csa07g00027 Csa-Chr7:395757 6.19E-21 dispersed
Csa07g00027 Csa-Chr7:395757 Csa07g00509 Csa-Chr7:3665194 6.67E-19 dispersed
Csa02g01300 Csa-Chr2:12644521 Csa07g00027 Csa-Chr7:395757 2.33E-57 wgd
Csa02g02104 Csa-Chr2:19152113 Csa07g00027 Csa-Chr7:395757 1.93E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32232 PF00643 zf-B_box 1.40E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00027 - - csv:101212584 432.18