Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00029 ATGGGGGCTTCGATAATCTCCTCTCACTCTCACTCTCTCCTTCTCCGGTCACTCCCCTCCTCCTTCTCCACCTTCTTCTCCAAACCCTCCGCCGCCGCCGCCATCTCCACTGTTTGTTTCCATCAATTTAAACCCAGCAGTTCAACCTTACTCACTCGCGAATCTCCTCACCATTACCGCCCTTTCACTCCCTCCGCACCCCTTTCCTTCTCTCGCTCCTTTTCCTCCACCATTTCCGATCCCTCCGAGGTCATATTTGATGAAGCCGACGATGAAATTGAAGACAAAGACGAAAGTGATTACGAAGATGAAGTTGAAATGGAAGATGAAGTTGGGGATGGAACGGAAACCGGTGTGGCTTCGGAGCTGTCTTCGCCGATTATGAGTAGAAATGAAGTGAAGAATATTCCGAGCTTGACGATTAAGGAGAAGAAGGAGCTGGCATCGTATGCTCATGGTTTGGGGAAGAAGCTGAAAAGTCAGTTGGTGGGGAAGTCTGGCGTCACTCCTGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTTAAGATCAAAATTCTCGGAAACTGTCCAGAGGAGCTTGAGGATGTGGTTAGGAAATTGGCGGAATCAACTGGCTCTGTAGTGGTGAATCAGATTGGCAGAACTGTTATTATTTATAGGCCCAGCATTACAAAAATGAAAGCAGAGGAAGAAAAACGACGTGCCCGAAAAGTTTATATGAGAAAAGAGCCTGATCGAGTCAAATCCATTTTGCAGAAGAAAATAGAAACACCTCAAAGTTCAAACCGTGGTCGTCGTGGAACCAGCAGGCAGATTAATCTGTAG 840 47.26 MGASIISSHSHSLLLRSLPSSFSTFFSKPSAAAAISTVCFHQFKPSSSTLLTRESPHHYRPFTPSAPLSFSRSFSSTISDPSEVIFDEADDEIEDKDESDYEDEVEMEDEVGDGTETGVASELSSPIMSRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKILGNCPEELEDVVRKLAESTGSVVVNQIGRTVIIYRPSITKMKAEEEKRRARKVYMRKEPDRVKSILQKKIETPQSSNRGRRGTSRQINL* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 419448 423435 + CsaV3_7G000290.1 Csa07g00029 535592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00029 279 ProSiteProfiles CRM domain profile. 137 236 IPR001890 GO:0003723
Csa07g00029 279 SMART CRS1_YhbY_2 139 225 IPR001890 GO:0003723
Csa07g00029 279 MobiDBLite consensus disorder prediction 254 279 - -
Csa07g00029 279 PANTHER CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED 7 275 - -
Csa07g00029 279 PANTHER CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED 7 275 - -
Csa07g00029 279 MobiDBLite consensus disorder prediction 258 279 - -
Csa07g00029 279 MobiDBLite consensus disorder prediction 90 115 - -
Csa07g00029 279 Gene3D - 138 238 IPR035920 -
Csa07g00029 279 SUPERFAMILY YhbY-like 138 227 IPR035920 -
Csa07g00029 279 MobiDBLite consensus disorder prediction 90 126 - -
Csa07g00029 279 Pfam CRS1 / YhbY (CRM) domain 139 225 IPR001890 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00029 K07574 yhbY; RNA-binding protein - csv:101213060 423.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00029 Csa-Chr7:419448 Csa03g03896 Csa-Chr3:34192392 1.24E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g22 . . . . . . . . . . . . . . . Cpe04g00105 . . . . . . . . Cla02g00490 Cam02g0499 Cec02g0500 Cco02g0506 Clacu02g0503 Cmu02g0499 Cre02g0831 . Cone8ag1226 . . . Csa07g00029 . Cme01g01351 . . Bda15g01072 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01134 . Chy01g00749 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010229 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00029 Csa_Chr07 FPKM 10.659065 11.449717 34.051819 33.228012 54.236443 53.825172 60.907524 40.981087 41.518303 46.113953