Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g00034 ATGGAAGCCGAAGAAGATGATTCTTCCTATCAGGACCAAAAATCTTCTTCTTTATATGTTGATGATGGAAAATTAGACGTTAAGTGTGATACCAATCGTGAAGAGCTTCTTAGCAATGAACAACAGCATTGTGTGTCCAAGTCCTCAATTATCGAAACGGGGTTTTCACCTAATACCGTTGTGGAATCTCTACCACCAAGAGATGCAATTCTTGGGGATGAGATTCTTGCTGTGGGTACTTGTTCAGAGATGGAGAAGAAGGATTTGGTGGAGGAGAGAGAGAGAGTAGAGGAGAACGATTTTCGCAACATTATTCAAGATATGGGTGAAGATTCAGTGAAGTTGGAGATTGAACCTGGTATTGCGAAAGCGGGGTTATTGGAGCAAAGGGCTTTCGATGATGTGAAAAAGAATACAGGGGTGACGGAGGAGGAGAAGGCTTTGAGTGAATTTGCTGAAGGTGAGTTGTTACCGGGGATGGTTTTTGTTGGTGTCGCTGAAAATCAGGTTGAGGGCAACGTTTTAATGGCGAACTTTTCAGAGCATACGGTCGTAGACGGTTCAGCTGGCTGTGTAGAGACAACCGAGACGACGTGTCTGAGTTATGTTTTGGCTGAGGAACGGCTTGCAGAAACGACACCTTTTGTGCAGGGCGTAGATGTTACTGTTGCAACCAATTTGGTGCAGAAGACAGAGGTGGAAGAGCATGCTGATGATACCAATGATTCGAAGGATACAGAGGTGCCAAAGCAAGAAAATTTTGCTGTGGAGAAGATGGAATTAGGCGTCCAGGTGCAGTTGGAAGAGGACTCTGAGTTGAAAGTTAGTTTGGTAGATGGGGTTGTGGAGGGACGGACGGAAAATTTAGCAGACAGAACTGGTGAAACGTTGAAGATGGAGAATGCCTCAAGCACTAGTAATGAGGTGGGGCTGACACATTTTGCTGTGGAGATTAAGGAGACGGTAAATATAGGAAATGATGAAGACAAGACTATGGAGACGGATGGAATGTGTGTGGAAGAAAAGGCTACTGATGTGGGGATGATGGAGAATTTGGCAGATGAGACCCCAGAGATCAAGGGAGTGGACGTAGCAGATTACAGCATTGAAGAGTTGAAGATCGAAGACATGGAGGATAGGGAAGCGGGGGTGCAAGGATTGGGTTTGGCCGATGAGAGTCCCGTGGTTGAGAAGCTCGAGAATGTGGCAGATGAGAATGCAGAGCCTGAGGGAGTGCAAGTGACTGACTACACCGCGGAAGAAGTAAAATCGGAGAATGTAGAAGATGACAAGACTGCACAAGGGGAGGAAGTAGCTATGGGAGAAGAGATTGCGGAGCCAGATGACATGGTTTATTTGGTGGATGAAGGGATTGGATCAGAGGAAACAGATGTAAACATGACATATTTAGTGGAGGAAACGGAAGCAGCAGAGGAGGTTGAGGAGATGGATGCTACAGAAGAGGTGGATGAGCCAAATATAAGTAGCAGTGGGTCTAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCAGCTAGAGTGGCTTCCAGGAAGAAGGTGGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGGTGATCTTGTTCTCTGTGATCGCAGAGGTTGTCCCAAGGCATACCACCCGGCCTGTATTAATCGCGATGAGGCATTCTTCCGAGCCAAGGGTCGATGGAATTGTGGTTGGCATCTCTGTAGTAACTGTGAGAAGACTGCCCATTACATGTGTTACACATGTACTTTTTCCTTGTGCAAGGGCTGCATAAAAAATGCGGTTATTTTATGTGTTAGAGGCAATAAAGGCTTCTGCGAGACATGCATGAGATTTGTTACGTCAATTGAAAAGAATGAGCAGGGGAATAAAGAAAAGGGCCAAATTGACTTTAATGACAAAAATAGCTGGGAATATCTTTTCAAGGAGTACTGGACAGATCTGAAGGGAAGTCTTTCTCTAACATTTGATGAACTTGTTCACGCCAAAAACCCATGGAAAGGATCTGAGACACTAACTAGCAGGCCTGATTCACCCGGTGAGCTATGTGATGGTAATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGTTCTAAAAAGAGAAAAGCTAAGAAAAGGTCAAGATCTCAAGCAAAGGAAATGAGTTCACCTAGTATGCCAGCTACAGCTTCTCAAGGGCTATCCACGGATGACAATGTTGAGTGGGGATCTAAAGAGCTCTTGGAGTTTGTAATGCACATGAAGAATGGTGATAGGACTGTTTTATCTCAATTTGACGTGCAGGCTCTCTTATTAGAATATATTAAAAGAAATAAGCTTCGTGATCCTCGACGGAAAAGTCAGATAATATGTGATTCAAGGCTTGAGAGTTTGTTTGGAAAGCCACGTGTGGGACATTTTGAAATGTTGAAGCTTCTCGAGTCACACTTCCTCATCAAAGAGGATGCCCAGATAAATGATCTGCATGTGAGTGTTGCTGAAACTGAATCAAGTCAGTTGGAGGCTGATGGGACTGATGGTTCAGGCAAGATTAAGAAAGAGAAAAAACGCAGGACAAGAAAAAAAGATGAGAGAGGATTGCAGTCTAACCTTGATGATTATGCAGCTATTGATATTCATAACATTAATTTAATTTACTTAAAACGTAACTTGGTGGAATACCTAATCGAAGATGAGGAGAGTTTTCATGACAAGGTTGTTGGTTCTTTTGTGAGGATAAGAATATCAGGCAGTGCACAAAAACAAGATTTATATCGGCTGGTTCAAGTCGTAGGTACAAGTAAAGCATCCGAGCCTTATAAAGTTGGTAAAAGGATGACTGATATCTTGCTAGAGATTTTGAATTTGAACAAGACAGAAGTGGTTTCAATTGATATTATCTCAAATCAAGAGTTCACAGAGGATGAGTGCAAGCGTCTCAGACAGAGCATGAAGTGTGGCATCATTAACCGTCTGACAGTGGGTGACCTCCAGGAGAGAGCCATGTCGCTTCAAGATGCCAGAGTCAAGGATTGGATGGAGACCGAGATAGTTCGACTGAGTCATCTTCGTGATCGAGCAAGTGAGAAAGGGCGTCGAAAAGAGCTTAGAGAATGTGTTGAGAAACTACAGCTTTTGAAGACACCCGAGGAGCGGCAACGCAGAATTGAGGAAATACCAGAAATACATGCAGACCCAAATATGGATCCGAGTCATGAATCTGAAGATGAAGATGAAGCGGATGATAAGAGACGAGAAACCTACACCTTGTCAAGAAGCACAAGCTTTGGCAGGAGGACGAGGGAGCCAGTTTCTCCTGGAAAAGGAGGTTCGCATTTGAATGACTCCTGGAGCGGGACTAGAAACTTCTCTAACACAAATCGGGACATGAGCAGGAACTTGTCTGGCAAAGGCTTTGCTAATCAAGGGGATGATGCCATTGGTTCCGGTGAAATAATAAATGAAACTTCATGGGGTCATGGAAGAGAGAGAGATGTTAAAAAAACAAGCAAGTGGGACAAACAAGTTTCGCCTAGTTCAGAAATCACTGCTAGGAATGCCTTGTCTGGGGCCGCATCTGAGTCTTCTGCTGCTCACTCGGTAAATCCAGCAGCATCTTCATCCGTGGGGACTACACAGAATGCTGCTACAGTAAATGAATCCGAGAAGATATGGCATTATCAGGATCCTTCTGGGAAAGTGCAGGGACCGTTTTCAATGGTGCAACTGCGCAAGTGGAGTAACACAGGTTATTTTCCTACAGACTTGAGAATATGGAGAATCTCAGACCAGCAAGAGGACTCCCTACTCTTGACCGATGTCTTAGCGGGAAAGATCTCAAAGGACACTCCATTGACAAGCAACAGTTTGCAAGTACACCCGAATTCTTCTCCATTTGTGGGCAGGCCTCAGGGAGGCACTTTGCAGTCAGGTGTGGATGGTCAAAATGCTAGTAGTTCAAATTCACATACTAATCCAACTTCTTATGATCAATCTTCTGGAGGAAGATGGAAATCTCAAAATGAAGTTAGCCCTACTGGTAGACCTGTCTCGGGTTCTATAAAAGTCCCTAGATATTCAGGAGACAGATGGTCTTCTGACCATGGCAATAAGAACTTCACTAATCTTCCTTCTCCTACTCCCAGCTCAGGAGGATCAAAGGAGCAGCCATTTCAAGTGGCTGCATCGTTCATGGAGGCAAAATCACTCTCAGGAACTGCTGGTGGTGGTTTGCATGGTTCTTCAGTAATGCAAGGGTCTGAAAATGACTCGCTGCGTTCACATTTGGGTCGGAATTCGTCAGAAAAGGGATTGGGTTCAGGTCCTATAAATGCACTCCAAAACCATCAATCTCAGCCAGTACGGCAATCACCTATCATTGATGATGCTTCGCTCAATCCAGCTGCAGATATTAGAAGCATTAGTGCAAATCTTCAGAGTTTGGTACAATCCATCAACAGTCGTAATCCTCCTATTGAAGCTCATGGACACGGGTCTGGCTCCATCCTGAAACGGGAAACAGATACATCGGAGGCATGGCAAAATGCACACTCTCTCAAAGTTGAATCAAACGTTTCTTCTAGCATGCCACCAGCACAAACTCTTCACAGTCGTTGGGGGGAGATGTCGCCTGCACAAAATGCTGCTGTCACATCATTCAGTGCAGGAAGTTCAACATCAAGTTTTTCCTCAGCCGGTATGTCCAGTTTTCCGTCTTCTGACCCTTGGCGATCTACAGCTCCTATTTCTAGTAACCCACAACACATTCAGTGTTCAACTCCACCCAATCTACCTTGGGGAATGGGTGCTCCAGAAGGTCAAAGTACTGTTCCACGACAGGGTTCAGAGTCTCAGAACCAAACTTGGGGGCCTATGCCATCAGGAAATCCAAACATGGGTTGGGGTCCAACAGGACCACCTCCAAACGCCACTGCTATGATGTGGGGAGCTACTGCTCAAAGTTCTGGTCCTGCAGCTACAAACCCGGGTTGGATTGCACCAGGTCAAGGGCCGGCAGCTGGAAACAACCTTCAAGGGTGGCCAGCTCACAGCCCTATGCCACCTCCGGTAAATGCAACTCCGGGATGGGTTGGTCCCAACGTTGCACCAATGCCACCCATGAACATGAATCCCAGTTGGCTCGTTCCATCTGTGAATCAGAACATGTGGGGTAATGAGCATGGCAAAAATGGGAATAGATTCTCGAACCAAAAGGATGGTGGTTCTCATGGCGGAGATCCCGGGAATGGAGATAAATCTTGGGGTATGCAACCATCTTTTGGCGGCGGCGGTGGTGGTGGTGGGAATTCTAGGTCACCTTACAATAGAGTGCAAAAACTGTGCAAATATCATGAAAGTGGACATTGCAAGAAAGGAGGTACTTGTGATTACAGGCACAAGTAG 5406 45.21 MEAEEDDSSYQDQKSSSLYVDDGKLDVKCDTNREELLSNEQQHCVSKSSIIETGFSPNTVVESLPPRDAILGDEILAVGTCSEMEKKDLVEERERVEENDFRNIIQDMGEDSVKLEIEPGIAKAGLLEQRAFDDVKKNTGVTEEEKALSEFAEGELLPGMVFVGVAENQVEGNVLMANFSEHTVVDGSAGCVETTETTCLSYVLAEERLAETTPFVQGVDVTVATNLVQKTEVEEHADDTNDSKDTEVPKQENFAVEKMELGVQVQLEEDSELKVSLVDGVVEGRTENLADRTGETLKMENASSTSNEVGLTHFAVEIKETVNIGNDEDKTMETDGMCVEEKATDVGMMENLADETPEIKGVDVADYSIEELKIEDMEDREAGVQGLGLADESPVVEKLENVADENAEPEGVQVTDYTAEEVKSENVEDDKTAQGEEVAMGEEIAEPDDMVYLVDEGIGSEETDVNMTYLVEETEAAEEVEEMDATEEVDEPNISSSGSKRKRGKNSKAPARVASRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPACINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKGCIKNAVILCVRGNKGFCETCMRFVTSIEKNEQGNKEKGQIDFNDKNSWEYLFKEYWTDLKGSLSLTFDELVHAKNPWKGSETLTSRPDSPGELCDGNVDGGSDLDVSENEESGSSKKRKAKKRSRSQAKEMSSPSMPATASQGLSTDDNVEWGSKELLEFVMHMKNGDRTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLESLFGKPRVGHFEMLKLLESHFLIKEDAQINDLHVSVAETESSQLEADGTDGSGKIKKEKKRRTRKKDERGLQSNLDDYAAIDIHNINLIYLKRNLVEYLIEDEESFHDKVVGSFVRIRISGSAQKQDLYRLVQVVGTSKASEPYKVGKRMTDILLEILNLNKTEVVSIDIISNQEFTEDECKRLRQSMKCGIINRLTVGDLQERAMSLQDARVKDWMETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRIEEIPEIHADPNMDPSHESEDEDEADDKRRETYTLSRSTSFGRRTREPVSPGKGGSHLNDSWSGTRNFSNTNRDMSRNLSGKGFANQGDDAIGSGEIINETSWGHGRERDVKKTSKWDKQVSPSSEITARNALSGAASESSAAHSVNPAASSSVGTTQNAATVNESEKIWHYQDPSGKVQGPFSMVQLRKWSNTGYFPTDLRIWRISDQQEDSLLLTDVLAGKISKDTPLTSNSLQVHPNSSPFVGRPQGGTLQSGVDGQNASSSNSHTNPTSYDQSSGGRWKSQNEVSPTGRPVSGSIKVPRYSGDRWSSDHGNKNFTNLPSPTPSSGGSKEQPFQVAASFMEAKSLSGTAGGGLHGSSVMQGSENDSLRSHLGRNSSEKGLGSGPINALQNHQSQPVRQSPIIDDASLNPAADIRSISANLQSLVQSINSRNPPIEAHGHGSGSILKRETDTSEAWQNAHSLKVESNVSSSMPPAQTLHSRWGEMSPAQNAAVTSFSAGSSTSSFSSAGMSSFPSSDPWRSTAPISSNPQHIQCSTPPNLPWGMGAPEGQSTVPRQGSESQNQTWGPMPSGNPNMGWGPTGPPPNATAMMWGATAQSSGPAATNPGWIAPGQGPAAGNNLQGWPAHSPMPPPVNATPGWVGPNVAPMPPMNMNPSWLVPSVNQNMWGNEHGKNGNRFSNQKDGGSHGGDPGNGDKSWGMQPSFGGGGGGGGNSRSPYNRVQKLCKYHESGHCKKGGTCDYRHK* 1802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 441994 456106 - CsaV3_7G000340.1 Csa07g00034 535597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g00034 1801 MobiDBLite consensus disorder prediction 840 866 - -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1723 1740 - -
Csa07g00034 1801 ProSiteProfiles GYF domain profile. 1223 1277 IPR003169 GO:0005515
Csa07g00034 1801 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 254 1800 - -
Csa07g00034 1801 Pfam Plus-3 domain 882 986 IPR004343 GO:0003677
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1176 1216 - -
Csa07g00034 1801 Gene3D - 878 1008 IPR036128 GO:0003677
Csa07g00034 1801 ProSiteProfiles Zinc finger C3H1-type profile. 1776 1801 IPR000571 GO:0046872
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1406 1453 - -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 669 739 - -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1052 1071 - -
Csa07g00034 1801 SUPERFAMILY FYVE/PHD zinc finger 517 568 IPR011011 -
Csa07g00034 1801 SMART PHD_3 523 569 IPR001965 -
Csa07g00034 1801 Pfam GYF domain 1226 1266 IPR003169 GO:0005515
Csa07g00034 1801 Gene3D - 1225 1281 IPR035445 -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1367 1391 - -
Csa07g00034 1801 Pfam SWIB/MDM2 domain 745 818 IPR003121 -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1283 1349 - -
Csa07g00034 1801 ProSitePatterns Zinc finger PHD-type signature. 524 584 IPR019786 -
Csa07g00034 1801 SUPERFAMILY GYF domain 1214 1276 IPR035445 -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 476 512 - -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1723 1775 - -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1556 1645 - -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1609 1628 - -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1409 1453 - -
Csa07g00034 1801 SUPERFAMILY Plus3-like 878 1008 IPR036128 GO:0003677
Csa07g00034 1801 MobiDBLite consensus disorder prediction 720 739 - -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1112 1139 - -
Csa07g00034 1801 SUPERFAMILY SWIB/MDM2 domain 741 819 IPR036885 -
Csa07g00034 1801 CDD SWIB-MDM2_like 743 818 - -
Csa07g00034 1801 CDD GYF 1223 1278 IPR003169 GO:0005515
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1556 1595 - -
Csa07g00034 1801 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 615 IPR013083 -
Csa07g00034 1801 PANTHER UNCHARACTERIZED 254 1800 - -
Csa07g00034 1801 CDD Bbox1 569 594 - -
Csa07g00034 1801 ProSiteProfiles Plus3 domain profile. 877 1010 IPR004343 GO:0003677
Csa07g00034 1801 SMART rtf1 877 987 IPR004343 GO:0003677
Csa07g00034 1801 CDD PHD5_NSD 523 568 - -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1489 1512 - -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1052 1216 - -
Csa07g00034 1801 ProSiteProfiles Zinc finger PHD-type profile. 521 587 IPR019787 -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1158 1175 - -
Csa07g00034 1801 MobiDBLite consensus disorder prediction 1283 1391 - -
Csa07g00034 1801 ProSiteProfiles SWIB/MDM2 domain profile. 737 820 IPR003121 -
Csa07g00034 1801 SMART swib_2 745 823 IPR019835 -
Csa07g00034 1801 SMART gyf_5 1224 1279 IPR003169 GO:0005515
Csa07g00034 1801 Gene3D SWIB/MDM2 domain 731 827 IPR036885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g00034 - - - csv:101218325 3482.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00533 Csa-Chr4:3507369 Csa07g00034 Csa-Chr7:441994 0 dispersed
Csa07g00034 Csa-Chr7:441994 Csa07g01229 Csa-Chr7:12156832 3.38E-12 dispersed
Csa07g00034 Csa-Chr7:441994 Csa07g01165 Csa-Chr7:11429549 3.50E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32233 PF03126 Plus-3 1.40E-24 No_clan Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa07g00034 Csa_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0